Plant FIBer expression Database

Lus10010477 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15140 73 / 1e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003804
[exp]
251 / 2e-86 AT4G15140 85 / 5e-21 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G008000
[exp]
84 / 1e-20 AT4G15140 86 / 3e-21 unknown protein
Potri.011G108700
[exp]
39 / 0.0003 AT4G15140 42 / 9e-06 unknown protein
Potri.004G061100
[exp]
39 / 0.0004 ND /
Potri.001G393001
[exp]
37 / 0.001 ND /
PFAM info
Representative CDS sequence
>Lus10010477 pacid=23154078 polypeptide=Lus10010477 locus=Lus10010477.g ID=Lus10010477.BGIv1.0 annot-version=v1.0
ATGCTGAACAACACTAAGAAAAGGAAACACTTCGGTTTAGACGAAGAAGAAGGAACTCGTCTTCTTCCTCTTCAGAGCCCGAGCTGCAAAGTGGTGGAGT
ATCTACAGCCAGTGATGTCGAAGGAGCTGCTGGTGAAGTTCCCTGACAACTCCGCCTTCGACTTCAACTACTCCGAGAGCTCCATCTGGTCGCCTCTCGT
GCCTCGAATCCACAATTTCGGAGGTGGGTTCTTGCCCAATTTGGATCTCGGCGACGACAGGTCCGGGTTGAGGAAGAAGAGGAGAAAGAAGATGACAATG
GCGGCAGAGGAGGACGGAGATAGTGTTTCCTGCAGGTTCAATTTCGGCGGCGGTTCGAAGACGGAGGAGGAGAAGGAGAATCGGGTCGAGGGTAGTACTA
GTACTGCTTCGTGTGTACCTCTAGCTTCCAAGGTACGATTTTTACTGATCGATTCGAGGTTTAACCAGAAAATTGTGGAATTCGGTTTTTACTTTCTAGT
ACTCCGGTTAGGTTAA
AA sequence
>Lus10010477 pacid=23154078 polypeptide=Lus10010477 locus=Lus10010477.g ID=Lus10010477.BGIv1.0 annot-version=v1.0
MLNNTKKRKHFGLDEEEGTRLLPLQSPSCKVVEYLQPVMSKELLVKFPDNSAFDFNYSESSIWSPLVPRIHNFGGGFLPNLDLGDDRSGLRKKRRKKMTM
AAEEDGDSVSCRFNFGGGSKTEEEKENRVEGSTSTASCVPLASKVRFLLIDSRFNQKIVEFGFYFLVLRLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15140 unknown protein Lus10010477
[exp]
0 1
AT5G11550 ARM repeat superfamily protein... Lus10011691
[exp]
2.0 0.9450
AT3G07610 IBM1 increase in bonsai methylation... Lus10027890
[exp]
2.6 0.9552
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Lus10036151
[exp]
3.9 0.9427
AT1G07820 Histone superfamily protein (.... Lus10015492
[exp]
5.5 0.9344
AT4G02800 unknown protein Lus10042577
[exp]
6.2 0.9309
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Lus10035943
[exp]
11.0 0.9354
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Lus10028044
[exp]
11.8 0.9316
AT3G57060 binding (.1.2) Lus10039012
[exp]
12.6 0.9321
AT2G42840 PDF1 protodermal factor 1 (.1) Lus10010941
[exp]
13.4 0.9310
AT4G18570 Tetratricopeptide repeat (TPR)... Lus10013931
[exp]
14.0 0.9271

Lus10010477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.