Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22142 55 / 5e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G10940 53 / 1e-08 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G62500 53 / 1e-08 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G15160 43 / 3e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22120 43 / 6e-05 CWLP cell wall-plasma membrane linker protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010479 [exp] 113 / 3e-31 AT3G22142 168 / 3e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10003802 [exp] 103 / 5e-27 ND 127 / 5e-33 Lus10003801 [exp] 103 / 7e-27 AT3G22142 168 / 7e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010482 [exp] 96 / 3e-26 AT3G22142 162 / 5e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032262 [exp] 62 / 1e-11 AT1G62500 162 / 3e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032257 [exp] 47 / 1e-06 AT4G12490 157 / 1e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10001493 [exp] 45 / 2e-06 AT1G62510 111 / 2e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10006191 [exp] 44 / 5e-06 AT1G62510 103 / 5e-29 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024621 [exp] 44 / 1e-05 AT4G12490 147 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G008300 [exp] 76 / 3e-17 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008500 [exp] 75 / 5e-17 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.016G015500 [exp] 73 / 2e-15 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G065500 [exp] 45 / 4e-06 AT2G10940 147 / 8e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.001G158400 [exp] 40 / 0.0002 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G025900 [exp] 39 / 0.0003 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G126000 [exp] 40 / 0.0006 AT2G10940 109 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010480 pacid=23154108 polypeptide=Lus10010480 locus=Lus10010480.g ID=Lus10010480.BGIv1.0 annot-version=v1.0 ATGGGAAGGATAAGGTTGATGTTGAGAAGCTTGAGCTTGATGGTGGTGCAAAGGCACAAGGCAGCATCCAAATCAGCTAGCCCTTGTACAAGAGGGCAGC AAGTCGACTTGGCGCTTTGTCCGATTCCAATGTGGACTAGCCCTCCTAACAAGTCCACACACGCGCCTAGCTTGAGCGCGTCAATGGGACACATGTCTTG CTTCGGTGGGGACGGTGGCATGGGCGATGGAGTTGGTGGCGGGCATGGTGCTGGTGGGGTGGCTGGTGGCGTTGGCTTGACTGTGGGTGGTGTTGGCTTG ACAGTTGGTGGGGTAGGCTTGACAGTCGGTGGGGTTGGCTTGACAGTTGGGGGTGTTGGCTTCACGGGTGGTGTTGGCTTGACAGTTGGTGGTGTTGGCT TCACGGGTGGCGTTGGCTTGACAGTAGGTGGTGTTGGCTTGACAGGTGGTGTTGGCTTGACAGTGGGTGGTGTTGGCTTGACAGGCGGCTTGACATGTGG TGGCTTAACCGGTGGCTTGGGAACATGA
AA sequence Show only first row Show all	>Lus10010480 pacid=23154108 polypeptide=Lus10010480 locus=Lus10010480.g ID=Lus10010480.BGIv1.0 annot-version=v1.0 MGRIRLMLRSLSLMVVQRHKAASKSASPCTRGQQVDLALCPIPMWTSPPNKSTHAPSLSASMGHMSCFGGDGGMGDGVGGGHGAGGVAGGVGLTVGGVGL TVGGVGLTVGGVGLTVGGVGFTGGVGLTVGGVGFTGGVGLTVGGVGLTGGVGLTVGGVGLTGGLTCGGLTGGLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010480 [exp]	0	1
AT2G20515			unknown protein		Lus10022928 [exp]	6.8	0.9340
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10025640 [exp]	8.9	0.9441
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10023094 [exp]	14.8	0.8855
AT4G40042			Microsomal signal peptidase 12...		Lus10006422 [exp]	16.8	0.8661
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	17.3	0.8632
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	21.2	0.9306
					Lus10038209 [exp]	23.7	0.9281
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	24.6	0.9255
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10013681 [exp]	28.7	0.9254
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	31.3	0.9241

Compare expression of checked genes

Lus10010480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.