Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06150 300 / 3e-98 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 283 / 5e-92 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT4G37490 281 / 4e-91 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT2G26760 236 / 2e-74 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G34460 224 / 2e-68 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2) AT1G76310 205 / 6e-62 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 201 / 4e-60 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 191 / 2e-56 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 187 / 4e-55 CYCB2;1 Cyclin B2;1 (.1) AT1G16330 190 / 2e-54 CYCB3;1 cyclin b3;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003800 [exp] 559 / 0 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10039033 [exp] 341 / 2e-114 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10036080 [exp] 275 / 6e-89 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 273 / 6e-88 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10027331 [exp] 252 / 7e-81 AT5G06150 262 / 2e-84 cyclin B 1;2, Cyclin family protein (.1) Lus10012261 [exp] 192 / 2e-56 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10030746 [exp] 190 / 4e-56 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 189 / 5e-56 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10016015 [exp] 185 / 3e-54 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033000 [exp] 295 / 2e-96 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 289 / 5e-94 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 272 / 4e-88 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 269 / 1e-86 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.002G010000 [exp] 204 / 2e-61 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 204 / 3e-61 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 196 / 3e-58 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 191 / 6e-57 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.010G173200 [exp] 182 / 4e-51 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 159 / 5e-43 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010483 pacid=23154126 polypeptide=Lus10010483 locus=Lus10010483.g ID=Lus10010483.BGIv1.0 annot-version=v1.0 ATGGCCTCCAAACCAATCGTTCCGCAGCAAGTTATAGATGATTTGAACAAGAATCCGCCGGAGCAGCAGAAGAAGAAGCCAATGGCAGAGAACAAGAACC GCAGAGCTCTCGGAGATATCGGCAATCTGGCCGCTGATGTCGTCCCTGAAATCGCCGGTAAGAAGATTTCTGAAATCGCCGGTAAGAAGATCACTCGTCC GGTCACCAGGAGCTTCCGCGCTCAACTCCTGGCCAACGCCCAAACCGCCGCCGACAAGGGGGAGGTGATCAACATTGAGTCTGACACAGAAGAAGAAACC ACCAAAGCTAACAGCGAGAAGACGAAGATCCGAGAAGAATCAAAGAAGAAGAAGAAGAAAGTTCAGACTTTCACTTCAATCCTCGCTACAGGAAGCAAGT TGGCTTGCGGTTCGGCCAAGAACAAACCAAACCAACCGGAACCAGTATTCGACATCGACGCATCCGACGTCGGTAACCATTTGGCCGTCACCGAGTACGT CGACGACATCTATGCTTTCTACAAGGAAGCCGAGAACGAGTGCCGGCCGATCTTCTACATGGAGAGCCAGCAGGAGATCACAACCAAGATGCGATCGATC CTCGTCGACTGGCTAATCGACGTCCACCAGAAATTCGAGCTCGCTCACGAAACCCTCTACCTAACAATCAACATCGTCGACCGCTTCCTATCCACAAAAC CCGTGCCCCGCCGGGAGCTTCAGCTGGTCGGAATCGCCGCCACACTGACGGCATCCAAATACGAGGAGATCTGGCCGCCGGAGGTGAACGATCTGGTGCT AATCTCCGACAGAGCCTACACCAACACCCAGATCCTGACCATGGAAAAGACCATCTTGGCCCACCTCGAGTGGACTCTGACGGTACCGACCCGGTTCGTA TTCCTGACCCGGTTCGTGAAGGCGGCGAGCGACAGAGAGTCGCTGGGACACATGGCGGCGTTCTTCTCGGAGCTGGGGCTGATGGACTATGAATGCTCGG TGGGGTTCAAGCCGTCGGTGGTGGCGGCGGCGGCGGTGGGCGGCGGCGGCGGTGTACGCGGCGAGGTGGGTGATGAAGCGGGTGCCCGTTTGGAGCCCGG TGCTGGAGTTCTACAGTGGGTATCGGGAGGAGGAGGTTATGGTTTGCGGGAAGATTCTGATTGGGTTGAAGGAGAAGGTTGGTGA
AA sequence Show only first row Show all	>Lus10010483 pacid=23154126 polypeptide=Lus10010483 locus=Lus10010483.g ID=Lus10010483.BGIv1.0 annot-version=v1.0 MASKPIVPQQVIDDLNKNPPEQQKKKPMAENKNRRALGDIGNLAADVVPEIAGKKISEIAGKKITRPVTRSFRAQLLANAQTAADKGEVINIESDTEEET TKANSEKTKIREESKKKKKKVQTFTSILATGSKLACGSAKNKPNQPEPVFDIDASDVGNHLAVTEYVDDIYAFYKEAENECRPIFYMESQQEITTKMRSI LVDWLIDVHQKFELAHETLYLTINIVDRFLSTKPVPRRELQLVGIAATLTASKYEEIWPPEVNDLVLISDRAYTNTQILTMEKTILAHLEWTLTVPTRFV FLTRFVKAASDRESLGHMAAFFSELGLMDYECSVGFKPSVVAAAAVGGGGGVRGEVGDEAGARLEPGAGVLQWVSGGGGYGLREDSDWVEGEGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	0	1
AT1G07970			unknown protein		Lus10038462 [exp]	1.4	0.9563
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	2.4	0.9586
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	3.5	0.9542
AT5G44040			unknown protein		Lus10032776 [exp]	4.9	0.9512
AT1G69070			unknown protein		Lus10019174 [exp]	5.5	0.9544
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	5.7	0.9482
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	6.5	0.9516
AT3G03130			unknown protein		Lus10009977 [exp]	6.7	0.9519
AT3G12870			unknown protein		Lus10031776 [exp]	6.9	0.9519
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	8.5	0.9475

Compare expression of checked genes

Lus10010483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.