Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12050 674 / 0 fumarylacetoacetase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003798 [exp] 897 / 0 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009200 [exp] 703 / 0 AT1G12050 727 / 0.0 fumarylacetoacetase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0377 [flax] [poplar] FAH PF01557 [flax] [poplar] FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family CL0377 [flax] [poplar] PF09298 [flax] [poplar] FAA_hydrolase_N Fumarylacetoacetase N-terminal
Representative CDS sequence Show only first row Show all	>Lus10010485 pacid=23154111 polypeptide=Lus10010485 locus=Lus10010485.g ID=Lus10010485.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCATCGAGGTTCGTCCGGATTCCCATTTCCCTATCCAGAACCTCCCGTACGGTGTCTTCAAGCACCAGCCGAGCTGCCTGCCTCGTCCGG CTGTTGCCATCGGTGACTACGTTTTGGACCTCTCGGAGATCTCTCTCGCCGGCCTCTTCGACGGTCCTATCCTCGGTTCTTCTGACTGTTTCCTCCAGCA TAACTTGAACAAGTTCTTGTCTCTGGGAAGACCTGCCTGGAAAGAAGCTCGTGCTACCCTTCAAAAGCTATTGTCATCGAACGAGCCGAAGTTGAGAGAT GATGCTAGCTTGAGAGAGAAAGCGCTTTTGCCAATGAGTGAGGTGGAAATGTTGCTTCCTGTTGCAATTGGGGACTACTCGGACTTCTTCTCCTCCATGC ATCATGCGAAGAACTGTGGAACCATGTTTCGCGGCCCTCAGAATCCAATTAATCTAAATTGGTTCCACCTCCCGATTGCATATCATGGCCGCGCATCTTC GATTGTTATTTCTGGAACAGATATAATCCGACCACGAGGACAAGGCCCTCCAAGTGGAAGTTCAACACCATACTTTGGACCTTCACAAAAGCTCGATTTC GAGCTAGAAATGGCTGCTATTGTTGGTCCCGGAAACGAGTTAGGAAAACCCATCGATGTTAACGAAGCAGCTGATCACATATTTGGGCTTGTACTGATGA ATGACTGGAGTGCTAGAGACATTCAAGCATGGGAATATGTCCCTCTCGGGCCTTTCCTCGGGAAGAGTTTCAGTACCACGATATCTCCCTGGATTGTAAC GCTCGATGCCCTAGCACCTTTTACATGCGACGCCCCTAAACAAGACCCTCCTCCTCTTCCTTACCTAGCTGAAAAGATCTCCAAAAACTACGACATTTCC TTGGAGGTCCAAGTCAAACCATCCGGACTTCAAGAGTCGAGTGTGGTTACAAGAACCAACTTCAATCACTTGTACTGGACCGTCACTCAACAGCTAGCAC ACCACACAGTGAACGGCTGCAACCTAAGGCCAGGCGACCTACTCGGAACAGGAACCATTAGCGGACCGGAGCCAGAATCTTACGGATGCTTACTAGAACT GACATGGAACGGGCAAAACCCACTCTCCCTCAACGGCGCCACTCGAAAATTCCTCGAAGATGGCGACGAAGTCACCATCACCGGCTTCTGCAAGGTCTGC AACTCTTCCCCCCTGGACTCTCACTATCTTCATTCATCTTCTTTTCTATCTAACTCGAACGATGCGATCGAATTCGAATTTCTATGCAGGGAGACGGTTA CAATGTCGGATTCGGAAACTGTACTGGGAAAATCCTCCCTTCAAACAAGTCTTAGAGCTCAGCTTCTCGTATCCGATAGCTAA
AA sequence Show only first row Show all	>Lus10010485 pacid=23154111 polypeptide=Lus10010485 locus=Lus10010485.g ID=Lus10010485.BGIv1.0 annot-version=v1.0 MASFIEVRPDSHFPIQNLPYGVFKHQPSCLPRPAVAIGDYVLDLSEISLAGLFDGPILGSSDCFLQHNLNKFLSLGRPAWKEARATLQKLLSSNEPKLRD DASLREKALLPMSEVEMLLPVAIGDYSDFFSSMHHAKNCGTMFRGPQNPINLNWFHLPIAYHGRASSIVISGTDIIRPRGQGPPSGSSTPYFGPSQKLDF ELEMAAIVGPGNELGKPIDVNEAADHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFSTTISPWIVTLDALAPFTCDAPKQDPPPLPYLAEKISKNYDIS LEVQVKPSGLQESSVVTRTNFNHLYWTVTQQLAHHTVNGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQNPLSLNGATRKFLEDGDEVTITGFCKVC NSSPLDSHYLHSSSFLSNSNDAIEFEFLCRETVTMSDSETVLGKSSLQTSLRAQLLVSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	1.7	0.9445
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	2.4	0.9390
AT5G43060			Granulin repeat cysteine prote...		Lus10014087 [exp]	4.7	0.9097
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	5.7	0.9256
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10034469 [exp]	8.5	0.9247
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	13.0	0.9101
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	13.2	0.9136
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	14.3	0.9016
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	18.8	0.9110
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	19.9	0.9093

Compare expression of checked genes

Lus10010485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.