Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12060 202 / 6e-65 ATBAG5 BCL-2-associated athanogene 5 (.1) AT2G46240 51 / 3e-07 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003798 [exp] 425 / 5e-146 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1) Lus10012648 [exp] 57 / 8e-09 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10010133 [exp] 52 / 2e-07 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 51 / 4e-07 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 50 / 1e-06 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014900 [exp] 205 / 3e-66 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1) Potri.003G167500 [exp] 89 / 4e-20 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.002G166300 [exp] 57 / 3e-09 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10010486 pacid=23154119 polypeptide=Lus10010486 locus=Lus10010486.g ID=Lus10010486.BGIv1.0 annot-version=v1.0 ATGTGGGGCCCAAATGATGATCTTTCTCGAAAGATAATCATCCATCTCCATTCCATTACAGGGTCACCATTTCATTTCAGCTTTGTCTCAGTTTCTTTCT TCTACTGCTGTCCTTTTTCTTTGCCTTCCCTGAAAGCCACCACCGCCATGAGAGGATTTCAAGAATACAACCACTTTAGCTACGCCTTCCACGACGATGT GCTTCCGGCGACTCCGATCACCACCAAGGAAATCCCAATCCAATTCTCTACTCCTCCCGCCACCGTCACCGACATCCAGATTATCCTCCACCTTCCGGAA AAACAGGCGGCGGCGACCAAGATCCAGTCGGCTTACCGAGCTCACGTAATCCGCTGCCTATACCGGACGATCTCCTCCGTCGATTCCCAGGCCGACGAGG TGCAGCGGAGGATCCAGCAGCAGGAGACTGTGGACGCGATCAGGAAGGAGGAGAAGGAGAAGCTTAGAGTCAACGAGGAGCTGATGAGGCTGCTTCTGAA GCTGGATTCCGTTCCGGGGGGAGTGGATCCAGCGGTTAGGGAAGCGAGGAGGAAGGTGAGCCGTAGGATCGTCAGTATGCAGGAGATACTCGACGGGATC TGCGAAGCTAAGGTTGATGACTGGGATTTAGATTTCGACTGCGGTGGAGGAGTTGGGGGGTTTAATTGGGATCGGACAGTGGCGGAAATGGAGGCGGAGA TTTGTAAAGAGAGAGGCGGCGATGAGATGGAGCGGTTCTGTGCTCAGTATCTCGGCTTCCGTTGCTTCCAGCGCTTTCTTCGGGAGCCTTAA
AA sequence Show only first row Show all	>Lus10010486 pacid=23154119 polypeptide=Lus10010486 locus=Lus10010486.g ID=Lus10010486.BGIv1.0 annot-version=v1.0 MWGPNDDLSRKIIIHLHSITGSPFHFSFVSVSFFYCCPFSLPSLKATTAMRGFQEYNHFSYAFHDDVLPATPITTKEIPIQFSTPPATVTDIQIILHLPE KQAAATKIQSAYRAHVIRCLYRTISSVDSQADEVQRRIQQQETVDAIRKEEKEKLRVNEELMRLLLKLDSVPGGVDPAVREARRKVSRRIVSMQEILDGI CEAKVDDWDLDFDCGGGVGGFNWDRTVAEMEAEICKERGGDEMERFCAQYLGFRCFQRFLREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	0	1
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	2.0	0.8681
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	2.8	0.8625
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	3.5	0.8498
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	4.9	0.8597
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	5.0	0.8396
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	6.5	0.8307
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	11.0	0.8199
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	12.0	0.8302
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	14.8	0.8019
AT3G53970			proteasome inhibitor-related (...		Lus10035223 [exp]	15.2	0.7267

Compare expression of checked genes

Lus10010486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.