Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12064 62 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039031 [exp] 71 / 3e-16 AT1G12064 80 / 4e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009500 [exp] 75 / 4e-18 AT1G12064 68 / 5e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010487 pacid=23154069 polypeptide=Lus10010487 locus=Lus10010487.g ID=Lus10010487.BGIv1.0 annot-version=v1.0 ATGCCTATATACATTAATTCCGTCGACGATAAGCATCCATCCATGCTTGATGCTTCTCCCTATTTAAAACGCCTTGGTTCCCAAATGGCAAACTCACCCC ATCAACAAAGGAAAAGAGATTTCGGATTCGTTATCATGCTCTATGCGGCGGTTCTCCTTCGCCGGACGACCACGGTGGCTCTGCTCATCCTCTGGCTCTT AGTAACCCCAGCTCTTCCCAACTGCCACCCTTCCCCGCCGCATCCGCATCCCAGCGGCGAGACGTGTAAACAGTGTGTGGTTGAGGAGATGCAGTACCGG TGCCGGAAATGCACCCCGATCCTCCGTTGCCTAGCGCGGTGCATGTGGAGCGGCGCCACCACGTCGAAGTGCGTTGGGAAGTGTGATTGCGGCGGCGGGA AGCCCACCATCTCCGACTGCAAAGCTTGCATGTCTAGGTGCAAATGCAGCTGTATGTGA
AA sequence Show only first row Show all	>Lus10010487 pacid=23154069 polypeptide=Lus10010487 locus=Lus10010487.g ID=Lus10010487.BGIv1.0 annot-version=v1.0 MPIYINSVDDKHPSMLDASPYLKRLGSQMANSPHQQRKRDFGFVIMLYAAVLLRRTTTVALLILWLLVTPALPNCHPSPPHPHPSGETCKQCVVEEMQYR CRKCTPILRCLARCMWSGATTSKCVGKCDCGGGKPTISDCKACMSRCKCSCM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12064			unknown protein		Lus10010487 [exp]	0	1
AT1G62935			unknown protein		Lus10009297 [exp]	7.8	0.8025
					Lus10002237 [exp]	9.3	0.7901
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	14.3	0.7773
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	14.4	0.7755
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	22.1	0.7699
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	23.7	0.7594
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	24.7	0.7126
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	27.6	0.7412
AT1G07476			unknown protein		Lus10016504 [exp]	36.1	0.6472
AT5G42905			Polynucleotidyl transferase, r...		Lus10036265 [exp]	36.5	0.7130

Compare expression of checked genes

Lus10010487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.