Plant FIBer expression Database

Lus10010488 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40690 135 / 3e-40 unknown protein
AT2G41730 65 / 8e-14 unknown protein
AT5G24640 55 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003797
[exp]
288 / 4e-101 AT5G40690 128 / 2e-37 unknown protein
Lus10015261
[exp]
140 / 2e-43 AT5G40690 82 / 2e-20 unknown protein
Lus10025381
[exp]
133 / 1e-40 AT5G40690 81 / 3e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G336200
[exp]
155 / 3e-48 AT5G40690 147 / 2e-44 unknown protein
Potri.001G338100
[exp]
125 / 1e-37 AT5G40690 137 / 7e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10010488 pacid=23154123 polypeptide=Lus10010488 locus=Lus10010488.g ID=Lus10010488.BGIv1.0 annot-version=v1.0
ATGAAGAGGGAAGGACGCCAACATGGGATGGTAAGAACATACCCAATCTTACCGTCTCCGATCGGCTCAAGACCCACCACTACCGGCGGCGAGTCCCCAC
TGCCCACCGCTGGTGTCTTCGCCAAGGTCAGCCGCAAGCCCACCAACCATTCCAAGTTCACCGGGAAATGCGGCGTGGCAAGATGCAAAGAATGTCACAT
CCATCCATGTACCAAGTCCAAGGACAAGGCCAAAGGGATCCAAAAGTCCCGTTCCAGCGATGTTGTGTCCAATCATAGATTGGTCACGTGGCGAGTTGTG
GATGACGGTCACGTGTCTAACTCTAATGGGTTTTCAGCTACCGGGATGTTGGACAGCTTAATGGATGTAGATCAATATTTCGATGTTGATGAAGGTTGTC
GAGAGATTGATGACTACGGTGACGATGACGATAAAATTGAGGAGCATATGAGTTTTTGTGATGTGGGTTTCGTGGTGGAGCAAGTTGAGGATTGGTGTTT
CGTGGAAGAATTGCAATGA
AA sequence
>Lus10010488 pacid=23154123 polypeptide=Lus10010488 locus=Lus10010488.g ID=Lus10010488.BGIv1.0 annot-version=v1.0
MKREGRQHGMVRTYPILPSPIGSRPTTTGGESPLPTAGVFAKVSRKPTNHSKFTGKCGVARCKECHIHPCTKSKDKAKGIQKSRSSDVVSNHRLVTWRVV
DDGHVSNSNGFSATGMLDSLMDVDQYFDVDEGCREIDDYGDDDDKIEEHMSFCDVGFVVEQVEDWCFVEELQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40690 unknown protein Lus10010488
[exp]
0 1
AT3G62150 ABCB21, PGP21 ATP-binding cassette B21, P-gl... Lus10009988
[exp]
2.0 0.9831
AT5G40690 unknown protein Lus10003797
[exp]
3.5 0.9723
AT1G20925 Auxin efflux carrier family pr... Lus10016046
[exp]
4.5 0.9774
AT2G02240 MEE66 maternal effect embryo arrest ... Lus10023207
[exp]
8.1 0.9784
AT2G15480 UGT73B5 UDP-glucosyl transferase 73B5 ... Lus10019833
[exp]
8.6 0.9787
AT4G04830 ATMSRB5 methionine sulfoxide reductase... Lus10009574
[exp]
8.9 0.9548
AT4G35180 LHT7 LYS/HIS transporter 7 (.1) Lus10022642
[exp]
9.2 0.9780
AT3G26330 CYP71B37 "cytochrome P450, family 71, s... Lus10002671
[exp]
9.5 0.9538
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Lus10008742
[exp]
13.2 0.9761
AT5G40850 UPM1 urophorphyrin methylase 1 (.1.... Lus10003913
[exp]
15.5 0.9774

Lus10010488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.