Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39445 166 / 2e-52 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) AT1G61280 135 / 7e-41 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003796 [exp] 291 / 6e-102 AT2G39445 187 / 5e-61 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134800 [exp] 172 / 8e-55 AT2G39445 222 / 5e-75 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) Potri.014G043400 [exp] 126 / 4e-37 AT1G61280 159 / 7e-51 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08510 [flax] [poplar] PIG-P PIG-P
Representative CDS sequence Show only first row Show all	>Lus10010489 pacid=23154156 polypeptide=Lus10010489 locus=Lus10010489.g ID=Lus10010489.BGIv1.0 annot-version=v1.0 ATGGAGGATGACGACGATGGTTACTCAGTGAACAGTCCACGGAGAGTGCTGAGCTTCTCGAAGACGAAGAAGAATCAGAGAACTGCAGAACGAAGTTCGA ATATCTTCAATCCTTCATCATCCATCTCCGGTCCTAAACCTTCAGAAGTTTACGGTTTCGTTGGCATCATTACCACTGTTGTCGCCACAGTCATCTTCCT AGCGTGGGCGTATGTTCCTGAATCATGGCTGCACTCCATTGGCATCTATTACTACCCTAACAGGTACTGGGCATTAGCAATGCCGACTTATGGGATGGTG ACAGTAGCTTTGGCACTCACTTTTTACATTGGTCTCAACTTCATCTCCACACCTTCCGCAACTTCGTTGTCCATGGTGTTCGACGAGTTTACCAGGGAAG CTGACGAGGATGCCCAGCTGGAAGTGCCACATCAGCAACAGGCAATCAAGCCCATATCAGATATTCCAGTTTACGTTGTGAACAATCTCATGTTCAGAGA CTCTACAGACAATATTAGTTCGGTTTCGGCTGATCAAGTCGAGCTGCTCTGTTCTTTTTCTCAACACCGGAAAGCATTGTGA
AA sequence Show only first row Show all	>Lus10010489 pacid=23154156 polypeptide=Lus10010489 locus=Lus10010489.g ID=Lus10010489.BGIv1.0 annot-version=v1.0 MEDDDDGYSVNSPRRVLSFSKTKKNQRTAERSSNIFNPSSSISGPKPSEVYGFVGIITTVVATVIFLAWAYVPESWLHSIGIYYYPNRYWALAMPTYGMV TVALALTFYIGLNFISTPSATSLSMVFDEFTREADEDAQLEVPHQQQAIKPISDIPVYVVNNLMFRDSTDNISSVSADQVELLCSFSQHRKAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	0	1
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	4.6	0.9174
AT1G11320			unknown protein		Lus10013574 [exp]	5.4	0.9270
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	6.2	0.9265
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	6.7	0.9143
					Lus10027730 [exp]	7.1	0.9268
AT3G18570			Oleosin family protein (.1)		Lus10041987 [exp]	7.6	0.8928
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	11.7	0.9152
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	11.8	0.8908
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	12.0	0.9112
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	13.6	0.8848

Compare expression of checked genes

Lus10010489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.