Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22350 692 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22285 690 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22410 510 / 3e-180 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT5G22030 63 / 3e-10 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 59 / 9e-09 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 57 / 2e-08 UBP9 ubiquitin-specific protease 9 (.1) AT1G32850 56 / 5e-08 UBP11 ubiquitin-specific protease 11 (.1) AT4G10590 55 / 1e-07 UBP10 ubiquitin-specific protease 10 (.1.2) AT5G10790 54 / 1e-07 UBP22 ubiquitin-specific protease 22 (.1) AT3G14400 52 / 8e-07 UBP25 ubiquitin-specific protease 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003795 [exp] 990 / 0 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10027746 [exp] 389 / 5e-133 AT4G22285 321 / 9e-107 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035547 [exp] 201 / 6e-62 AT4G22285 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10027745 [exp] 189 / 1e-56 AT4G22285 150 / 2e-42 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035548 [exp] 108 / 2e-27 AT4G22410 102 / 3e-26 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10013369 [exp] 68 / 1e-11 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 68 / 1e-11 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 64 / 3e-10 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 64 / 3e-10 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010100 [exp] 780 / 0 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.016G014000 [exp] 773 / 0 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.016G031900 [exp] 66 / 6e-11 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G201100 [exp] 64 / 1e-10 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 63 / 4e-10 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 63 / 4e-10 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.011G112800 [exp] 61 / 1e-09 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 57 / 3e-08 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.018G017000 [exp] 56 / 4e-08 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.001G449000 [exp] 56 / 5e-08 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10010490 pacid=23154138 polypeptide=Lus10010490 locus=Lus10010490.g ID=Lus10010490.BGIv1.0 annot-version=v1.0 ATGGTGACGAAGAGAGAACACGATACAATGGTGGACGAAGAAGGTTCGACGAAGAGACAGAGAGTTCAGAAAGAAGGTTCATCTCCGACTCAGTCTATTG ATAATCCTCTAGTTCCATACAATGACGTGGATGACGAGGAAGAGAATGGAAAGAGCCAGCAGAAGAACAATGACGGTGAAGAAAGGGTTAACGGAGATAA GGTAGTAACGAATGGTGATCAAGGAGGACGTGATGAGGAGGAGGATGATGATGACGAACTTGATCAACTAGAGGCTAGCATCCAGAGGCGGAGGAAGCAA CTGGAACCTCGCGAGGACTGTCCTTATCTCGACACAGTGAATCGCCAGGTGCTGGATTTCGATTTCGAGAAGTTTTGCTCGGTGTCGCTGTCGAATCTGA ATGTCTATGCGTGTCTGGTGTGTGGGAAGTATTACCAAGGGAGGGGGAAGAAGTCTCATGCGTACACTCACAGTCTTGAAGCAGGGCACCATGTGTATAT CAACTTACAGACTGAGAAGGTGTACTGTCTTCCTGACGGATATGAGATCATTGATCCATCTTTGGATGACATACGGCATGTGCTGAATCCGAGGTTTACA ATGGAACAAGTTGAGCAGTTGGATAAGAACAAACAATGGTCTAGGGCACTTGATGGTTCCGATTACCTTCCGGGAATGGTTGGCCTCAATAACATCCAGG GAACTGACTTTGTGAACGTCACAATTCAGTCTCTGATGAGGGTAACACCTCTAAGAAATTTCTTCCTCATTCCGGAAAACTACGAGAAATCTCGTTCCAT TCTCGTTCAACGTTTCGGGGAGCTGACGCGAAAGATATGGCATGCTCGAAACTTTAAGGGACAGGTGAGCCCTCATGAGTTTCTTCAAGCAGTTATGAAA GCCAGCGATAAAAAGTTTCTCATAGGGCAGCAGTCTGACCCTTTGGATTTCATGCGATGGCTTCTCGACACACTTCATAAGGAGCTTAAAAAATTGAAGA AGAATAACAACATCATTCTCGATTGCTTTGAGGGGGAATTGGAAGTCATCAAAGAGTTCCCCCATGGTACAGACAGTGAGACTGAACTTAACAACGCTCA CAAGGAAACTTCGAGAATGACGTTCAAGATGCTCGGTCTGGATTTGCCACCACCTCCATTGTTTAAAGATGTGATGGAGAAGAATATTATTCCACAGGTT CCTTTATTCAACATCCTGAAGAAGTTCGACGGAGAGACCATCACCGAAGTAGTAAGGCCTCATGTCGCGAGGATGAAGTACCGAGTCACCAGATTGCCAA AGTATCTTATTCTTCACATGCAACGATTCAAGAAGAACAACTTCTTCATTGAGAAGAACCCAACTATAGTCAACTTTCCTGTGAAGAACTTGGAACTGAA AGATTATATCCCTCTGCCTACTCCGAAGAAGGGCCAGAAACTCCGCTCGAAGTACGACTTGATAGCTAACATCGTCCATGATGGCAAGCCGAAGGAAGGC TTCTACCGAGCTTTTGTGCAGCGCAAGTCAGAAGAGCTATGGTATGAGATGCAGGATCTACATGTCTCCGAAACGCTTCCTCAGATGGTTGCTCTCTCCG AGGCGTATCTGCAGATATACGAGCAGCATCAGTACTAA
AA sequence Show only first row Show all	>Lus10010490 pacid=23154138 polypeptide=Lus10010490 locus=Lus10010490.g ID=Lus10010490.BGIv1.0 annot-version=v1.0 MVTKREHDTMVDEEGSTKRQRVQKEGSSPTQSIDNPLVPYNDVDDEEENGKSQQKNNDGEERVNGDKVVTNGDQGGRDEEEDDDDELDQLEASIQRRRKQ LEPREDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLQTEKVYCLPDGYEIIDPSLDDIRHVLNPRFT MEQVEQLDKNKQWSRALDGSDYLPGMVGLNNIQGTDFVNVTIQSLMRVTPLRNFFLIPENYEKSRSILVQRFGELTRKIWHARNFKGQVSPHEFLQAVMK ASDKKFLIGQQSDPLDFMRWLLDTLHKELKKLKKNNNIILDCFEGELEVIKEFPHGTDSETELNNAHKETSRMTFKMLGLDLPPPPLFKDVMEKNIIPQV PLFNILKKFDGETITEVVRPHVARMKYRVTRLPKYLILHMQRFKKNNFFIEKNPTIVNFPVKNLELKDYIPLPTPKKGQKLRSKYDLIANIVHDGKPKEG FYRAFVQRKSEELWYEMQDLHVSETLPQMVALSEAYLQIYEQHQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	2.0	0.8894
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	2.4	0.8444
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10019430 [exp]	3.9	0.8509
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	8.5	0.8285
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	14.1	0.8660
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	16.0	0.8207
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	16.4	0.8299
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	18.0	0.8590
AT3G01160			unknown protein		Lus10041866 [exp]	18.5	0.7962
AT5G46920			Intron maturase, type II famil...		Lus10011050 [exp]	20.5	0.8524

Compare expression of checked genes

Lus10010490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.