Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 275 / 7e-93 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 261 / 5e-88 Immunoglobulin E-set superfamily protein (.1) AT1G12070 249 / 3e-83 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003794 [exp] 336 / 2e-117 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 311 / 1e-107 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 306 / 3e-105 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 279 / 1e-94 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 278 / 3e-94 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 271 / 2e-91 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 267 / 4e-90 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003793 [exp] 59 / 2e-10 AT4G22370 86 / 4e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010500 [exp] 292 / 1e-99 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 291 / 2e-99 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 270 / 6e-91 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 267 / 6e-90 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 225 / 3e-73 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 175 / 5e-54 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013200 [exp] 42 / 0.0002 AT4G22370 114 / 6e-32 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10010491 pacid=23154145 polypeptide=Lus10010491 locus=Lus10010491.g ID=Lus10010491.BGIv1.0 annot-version=v1.0 ATGGCCGTCATCACCGTTGCATCTTCATCTCCTTGTCATTCTCCTTCATCAAAGCTTCCCCACATAGTCCTTCCAAATGCTCAGCGCATATCCTTCAATT CCGCGCAGAATCATCATTCTACTTCGTCGAAGCGATCAAGTACTGTATGCCCACGACAAAGGATAGTAGTAATCGATGGTAAAAGGTTCTCCTCATCAAT ATCATCATCAAACAACAATGACAACATCAGTAAGAATATTCCAAGTGATGATAACGATGATGATGACGGCGATGAGGAATGGTGCAAGACCATGTTTCCT TTGGGTAAAGGTTTTAGCTTCCACATTCACCAAATCTACCAAGGAAAGTTTTTGATGAGGTTCGACTATGATGATGAGAGCTTGAGGAGGTGGAAGGAGC AACTCATTGGAGCTGTGGATATTGAAACTGTTGGAGAGACTCTCGATCCAGAAGTCAAGATTTTGAGCCTAGCAATCAAGTCCCCCGGAAGGGACGACAT TGTTCTCCCGATTCCCGCAAACGAAGATCCAAAAGGATGTTGGTTCACTTTGAAAGAAGGCTCTCGATACAGCTTACTCTTCACCTTCGAAGTGAAGAAT AACATCGTATGTGGCCTTCGATACACCAACACGGTCTGGAAAACCGGAGTTAAAGTTGATAGTACAAAGGAGATGCTTGGAACTTTTGGTCCTCAAGCAG AGACTTACACTCATGAGATGCCAGAGGAGACCACTCCTTCTGGCATGTTTGCTAGAGGCTCATACTCGGCTAGAAGTAAGTTTGTTGATGACGACAACAA GTGTTACTTGGAGATCAATTACACCTTTGATATTCGTAAAGAATGGATGGCCGCTTAA
AA sequence Show only first row Show all	>Lus10010491 pacid=23154145 polypeptide=Lus10010491 locus=Lus10010491.g ID=Lus10010491.BGIv1.0 annot-version=v1.0 MAVITVASSSPCHSPSSKLPHIVLPNAQRISFNSAQNHHSTSSKRSSTVCPRQRIVVIDGKRFSSSISSSNNNDNISKNIPSDDNDDDDGDEEWCKTMFP LGKGFSFHIHQIYQGKFLMRFDYDDESLRRWKEQLIGAVDIETVGETLDPEVKILSLAIKSPGRDDIVLPIPANEDPKGCWFTLKEGSRYSLLFTFEVKN NIVCGLRYTNTVWKTGVKVDSTKEMLGTFGPQAETYTHEMPEETTPSGMFARGSYSARSKFVDDDNKCYLEINYTFDIRKEWMAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10010491 [exp]	0	1
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	3.2	0.8791
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040065 [exp]	5.3	0.8659
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	7.6	0.8775
					Lus10041944 [exp]	9.8	0.8723
					Lus10003879 [exp]	11.2	0.8549
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	14.8	0.8477
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	15.5	0.8465
					Lus10018627 [exp]	15.7	0.8602
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	17.9	0.8621
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	18.3	0.8569

Compare expression of checked genes

Lus10010491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.