Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 828 / 0 UPL5 ubiquitin protein ligase 5 (.1) AT1G55860 192 / 6e-50 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 191 / 2e-49 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 132 / 4e-31 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 126 / 3e-29 UPL7 ubiquitin-protein ligase 7 (.1.2) AT5G02880 81 / 3e-15 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 66 / 1e-10 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT3G52590 59 / 2e-10 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 59 / 2e-10 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 60 / 3e-10 UBQ5 ubiquitin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003792 [exp] 601 / 0 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10027324 [exp] 484 / 9e-164 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 200 / 4e-52 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 193 / 6e-50 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 184 / 5e-47 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10039026 [exp] 132 / 2e-35 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10035589 [exp] 131 / 9e-31 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10027323 [exp] 111 / 7e-27 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1) Lus10008636 [exp] 100 / 4e-21 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012900 [exp] 1158 / 0 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.006G011701 [exp] 1150 / 0 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 988 / 0 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 199 / 5e-52 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 187 / 3e-48 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 184 / 5e-47 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 136 / 2e-32 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 123 / 2e-28 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 118 / 8e-27 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.004G174700 [exp] 68 / 3e-11 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase) CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10010493 pacid=23154072 polypeptide=Lus10010493 locus=Lus10010493.g ID=Lus10010493.BGIv1.0 annot-version=v1.0 ATGTCTCAATCACGATCATCGGCCAGCGATAGTCCCTCTCATCGCACTGCTGCCAGCCCCGTCGTCAGTGGCGCCGCCGCCGCCTCCAGCGAGTACCGCG CCTCGGCGAAGCGCAAGTTGGACGACTACGTGTCCTCCATCGAGGACGACGATGACCTCGACATTTGGGACGACCTGGTGAGCGTGAGGATGCGGAAGGA CGATTCCCTCCTCGCCGTTAACTCTTCATCCGACTCTCAGAATAAGAATCGGCCGCCGTTTACCGACGATGATTTGGAAGGGGTCGTGTCCCTCTCGACT ATGGCTTCGTGTTCATATGCGACTTCGGGTTTTCAAGCGTGTGGAGAATCCTCGGTTTCGAAGATCCAGTTCTTCGTCCGGATGATCGCTGAAGGTAAAC ATGTTGTTGTCTACGCTAGCCCGGAGGATACCGTGGAGTCTATTATGGAGAGAATTCAGGTGATCACTGGGATTTCTTCTTACCAGATGAGGTTAATTTA CAACGGGAAGCAGCTGCAGCTAGATCAATCAGTGGCAAAGTGTGGAATTCAGAAGGATGCCACACTTCACTTAGTTGCACGGATGAGGAGCACTAAGCAT CCGCAGACTTGTCGGGTAGTCGAGGACATGGTAATGTTTATCTGGAGGCTGTGTAAAAGTGGAATGCCAGCTTATTCTTATGCGCCTAAGCATATCAAGG ATTTGATTAGCGAGTTCTTCAAGCTGGCTGCAAATAGTGAAACGGAAGATGCAACTGGGCATTTTGAGATTTTCATGTCCTGCTCTGCTCCAGAGACATT GACGATGCTGTATGTCTCGACCAACAAAGGTAACAGTGATTGTGCTGATAGTTCGATTAGGCACTTCTTGAATTCATGTAGGATCTCTTTACCGAAGCCA TTGCATGCGAAGTGTACACCTATAGTATTAGAATTTTGCAAGTTGCTTAGGAAGGTTGCTAATGACGATCCTCTATATCTTTGCTGTCGGAATACTCTTG GTTCATTGTTGGATAATGATTCTGGGTGGCGTTGGTCATCTAAGAATGGGGTGGGAGCGGATGATGCAAAGGGGTCGATTACGATAGCAGAGATTTTTCC GTTTGTTCAAGAGTTAGCTACTAGGTTGTCCAATGATCTGGGTTCAAGTCTGAAAACTCCAGTGAGTTTAGGACCATTAGGATGTGATGTCCGTGACTTC TCTGCATTCTTGACACCTTTACGAATGGCTATATCGGAGCAAGTGGGACGGCCTGTTACAATGCCTTTGAACAAGAAAGGTGTTGACCATCTGTTATATG CCGGAGAGATGGAGCAGCTTAGTGTTATATTTAGGGACTTATTGACAAAGATGGATCAATGCCTTATGAAGGTGGAGGGCTCCTCGCTTTTGAAGTCAAG TGGAGAGTGTGAGTTGAGCAGTACCTCATGGTCTCAGTATCTTGCCATTTTGAAGGAATTGAATGAAATAGCTAAGCTCTACAAGGATTCCGAAGAACAA TTCTGGACAATTTTGAGGCTTAGAAAGGCTTCTATTTGTGTTTTGATTGTCAAATATGCAAAGAGAGCTGAGGATCATCAGTGGCTCCTCAAACACAAGG ATGTGACGGATTTTGAGTCAAGAAGACATTTGGCTATGATGATGTTCCCTGAGGTGAAAGAAGACTATGAAGAGCTGCATGAAATGCTTATTGACAGGGC TAACCTGCTGGAGGAGTCATTTGCATACATTGGTCGTGCCGAACCAGATTCTTTGCATGGAGGTTTGTTTATGGAGTTCAAGAATGAGGAAGCTACTGGT CCTGGTGTATTACGTGAGTGGTTTCTCTTGGTTACACAGGCTATTTTCAACCCTCATAATGCTCTTTTTCTAGCATGCCCAAGTGATCGCAGAAGGTTCC ACCCTAACCCTGCTTCGAAGGTTGAACCTAGGCATCTCGAGTATTTCGCCTTTTCCGGTCGAGTGATTGCATTAGCTTTGATGCACAAAGTGCAAGTGGG CATAGTCCTAGATCGGGTCCTTTTCTTACAATTAGCTGGAGGGCCTATATATTTGGAAGACATAAAGGATGCTGATCCGATCCTGTACAGTAGCTGCAAG CAAATCCTGGATATGGATGCCGAGTTTATTGATTCCGATGCTTTAGGGCTGACATTTGTTAGAGAAGTCGAGGAGTTGGGATCCAGGAACGTTGTAGAAC TCCGTCCTGGAGGGAAAAACATCGTAGTGAATAGCAAGAACAGAGGGGAGTACGTAACCCTTCTGGTTCGGCATCGATTTGTCACATCCATCTCTGAGCA GGTCTCACATTTTGCAAAAGGATTCACTGATATTCTTTCCAATGGAAGTTTCCGACACTCTTTTTTCCAAAGCTTGGAGCTAGAAGACCTTGATTGGATG CTTTACGGAAGTGAAAGCGCAATCTGTGTTGAAGACTGGAAGGCACATACTGAGTACAATGGCTTCAAAGAAACAGATCCCCAAATATCCTGGTTCTGGA AGATTGTTGAGGAAATGCCAGCCGAGCGGAGGAAAGTATTGCTCTTCTTCTGGACATCAATTAAATACCTACCGGTTGAAGGTTTCCGAGGACTTGCTTC TCGTCTATACATATACAAGTCCACGGAGCCACAAGATCGTCTCCCTTCGTCCCATACATGCTTCTACAGGCTGTGCTTCCCACCCTATCCATCCATGGAC ATCATGCAAGATCGACTCCGCGTCATAACCCAAGAGCATATTGGTTGCAGCTTCGGCACCTGGTGA
AA sequence Show only first row Show all	>Lus10010493 pacid=23154072 polypeptide=Lus10010493 locus=Lus10010493.g ID=Lus10010493.BGIv1.0 annot-version=v1.0 MSQSRSSASDSPSHRTAASPVVSGAAAASSEYRASAKRKLDDYVSSIEDDDDLDIWDDLVSVRMRKDDSLLAVNSSSDSQNKNRPPFTDDDLEGVVSLST MASCSYATSGFQACGESSVSKIQFFVRMIAEGKHVVVYASPEDTVESIMERIQVITGISSYQMRLIYNGKQLQLDQSVAKCGIQKDATLHLVARMRSTKH PQTCRVVEDMVMFIWRLCKSGMPAYSYAPKHIKDLISEFFKLAANSETEDATGHFEIFMSCSAPETLTMLYVSTNKGNSDCADSSIRHFLNSCRISLPKP LHAKCTPIVLEFCKLLRKVANDDPLYLCCRNTLGSLLDNDSGWRWSSKNGVGADDAKGSITIAEIFPFVQELATRLSNDLGSSLKTPVSLGPLGCDVRDF SAFLTPLRMAISEQVGRPVTMPLNKKGVDHLLYAGEMEQLSVIFRDLLTKMDQCLMKVEGSSLLKSSGECELSSTSWSQYLAILKELNEIAKLYKDSEEQ FWTILRLRKASICVLIVKYAKRAEDHQWLLKHKDVTDFESRRHLAMMMFPEVKEDYEELHEMLIDRANLLEESFAYIGRAEPDSLHGGLFMEFKNEEATG PGVLREWFLLVTQAIFNPHNALFLACPSDRRRFHPNPASKVEPRHLEYFAFSGRVIALALMHKVQVGIVLDRVLFLQLAGGPIYLEDIKDADPILYSSCK QILDMDAEFIDSDALGLTFVREVEELGSRNVVELRPGGKNIVVNSKNRGEYVTLLVRHRFVTSISEQVSHFAKGFTDILSNGSFRHSFFQSLELEDLDWM LYGSESAICVEDWKAHTEYNGFKETDPQISWFWKIVEEMPAERRKVLLFFWTSIKYLPVEGFRGLASRLYIYKSTEPQDRLPSSHTCFYRLCFPPYPSMD IMQDRLRVITQEHIGCSFGTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10010493 [exp]	0	1
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	10.3	0.9288
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	10.8	0.8899
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	11.0	0.8601
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	11.7	0.9093
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	12.8	0.9086
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	14.5	0.9108
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	17.2	0.8996
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	17.2	0.8901
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	17.9	0.8910
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	18.6	0.8963

Compare expression of checked genes

Lus10010493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.