Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 1074 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 1063 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 609 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 587 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G42020 487 / 3e-164 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 487 / 3e-164 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 476 / 2e-160 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 476 / 5e-160 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 472 / 2e-158 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 464 / 5e-156 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017566 [exp] 1207 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 1152 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10037357 [exp] 1121 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10035781 [exp] 1113 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 970 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10009039 [exp] 624 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 620 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 616 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 586 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006300 [exp] 1108 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 1099 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 625 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 528 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.003G143600 [exp] 496 / 6e-168 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 495 / 2e-167 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 487 / 3e-164 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 481 / 6e-162 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.013G018000 [exp] 480 / 1e-161 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 476 / 3e-160 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10010496 pacid=23154142 polypeptide=Lus10010496 locus=Lus10010496.g ID=Lus10010496.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGGCTGCCCAGATTCATGTCCTCGGAGCCATGGGCTTCAGCAGCTCCTCATCGAAGAAACCCACCTTCTCTTTCGCCCCCAAGGCGGCGT TTTTGAGATACAGCGGCGGAGCCCGGAAGAGGAGCTACGGTCCCTTGAGGGTGGCGTGCGAGAAAGTGGTTGGGATTGACCTTGGCACGACGAATTCTGC TGTGGCGGCCATGGAAGGTGGGAAGCCGACGATTGTGACCAACGCTGAAGGTCAACGGACGACTCCCTCGGTGGTGGCGTACACGAAGAACGGGGATAGG CTTGTGGGTCAGATTGCTAAAAGGCAAGGGGTTGTGAACCCTGAGAACACTTTCTTCTCCGTGAAGAGGTTTATTGGGAGGAAGATGTTGGAGGTTGATG AGGAGTCCAAGCAGGTTTCTTATAAGGTGGTGAGGGATGATAATGGGAACGTGAAGTTGGATTGTCCTGTTTTGGGGAAGCAGTTTGCTGCTGAAGAGAT TTCAGCTCAGGTTCTGAGAAAGCTAGTGGACGATGCTTCGAAGTTTCTGAACGATAAAGTGACGAAAGCTGTTGTCACGGTCCCTGCTTACTTCAATGAC TCTCAGAGGACAGCTACAAAGGATGCTGGTCGAATTGCAGGGCTGGAAGTCCTCCGTATCATCAACGAGCCTACTGCTGCTTCGTTGGCTTATGGTTTCG AGAAGAAGAATAACGAGACAATCCTAGTGTTCGACCTTGGTGGTGGCACCTTTGATGTTTCAGTTCTTGAGGTTGGTGATGGAGTTTTTGAAGTGCTGTC CACCTCCGGAGACACACACTTGGGAGGAGATGATTTCGACAAGAGAATTGTTGACTGGCTTGCTGCTGACTTTAAAAGGGATGAAGGTATTGACCTTTTG AAGGACAAACAAGCTCTGCAACGGCTAACTGAGACAGCCGAGAAGGCCAAAATGGAGCTCTCATCTTTGACTCAAGCTAACATCAGTTTGCCATTCATCA CCGCCACTGCTGAAGGTCCCAAGCACATCGAGACGACCCTTACCAGGGTCAAGTTCGAGGAGCTGTGCTCCGATCTGCTCGACAGGCTGAAAACCCCGGT TGAGAATTCGCTGAGGGACGCCAAACTCAGCTTTAAAGACCTTGACGAGGTCATTCTCGTTGGTGGATCGACACGTATCCCTTCCGTACAAGAGCTCGTG AAGAAGCTGACAGGGAAGGACCCTAACCTCACTGTGAACCCTGACGAAGTTGTGGCTCTCGGTGCTGCGGTCCAGGCTGGCGTTCTCTCCGGCGATGTCA GCGACATCGTGCTCTTGGATGTCACTCCGTTATCGATCGGTTTGGAGACTCTCGGAGGAGTAATGACCAAGATCATTCCGAGGAACACCACACTTCCCAC CTCCAAATCGGAGGTGTTCTCGACGGCTGCAGATGGGCAAACGAGCGTCGAGATCAACGTTCTTCAAGGCGAGAGAGAGTTTGTAAGAGACAACAAGTCT CTAGGAAGCTTCCGCTTGGATGTCAAATTCGACATTGATGCCAATGGCATCCTCTCCGTCACCGCCAGTGACAAGGGCACTGGCAAGAAGCAAGACATTA CGATCACTGGTGCCAGCACTCTGCCTAGCGACGAGGTCGAGAGGATGGTCCAAGAAGCGGAGAGATTCGCAAAGGAGGACAAGGAGAGTAGAGACGCGAT CGACACGAAGAACCAGTCGGATTCTGTGGTGTATCAGACCGAGAAGCAGCTGAAGGAGCTTGGAGATAAAGTTCCGGCTGCAGTCAAAGAGAAGGTGGAA TCGAAACTCCAGGAGCTCAGGGATGCCATTGCTGGGGGATCGACTCAAGCGATGAAAGATGCTATGACGGAACTGAACCAAGAAGTTATGCAACTCGGTC AGTCCCTTTACAACCAACAAGGTGGTTCGGCTGCACCGGGTGATGGTCCAACTCCTCCTCCGGGGAATGAGTCTGGATCGGATTCTTCGAGCAAAGGACC TGATGGAGATGTCATTGATGCGGATTTCACAGACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10010496 pacid=23154142 polypeptide=Lus10010496 locus=Lus10010496.g ID=Lus10010496.BGIv1.0 annot-version=v1.0 MASSAAQIHVLGAMGFSSSSSKKPTFSFAPKAAFLRYSGGARKRSYGPLRVACEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR LVGQIAKRQGVVNPENTFFSVKRFIGRKMLEVDEESKQVSYKVVRDDNGNVKLDCPVLGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFND SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAADFKRDEGIDLL KDKQALQRLTETAEKAKMELSSLTQANISLPFITATAEGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPSVQELV KKLTGKDPNLTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKS LGSFRLDVKFDIDANGILSVTASDKGTGKKQDITITGASTLPSDEVERMVQEAERFAKEDKESRDAIDTKNQSDSVVYQTEKQLKELGDKVPAAVKEKVE SKLQELRDAIAGGSTQAMKDAMTELNQEVMQLGQSLYNQQGGSAAPGDGPTPPPGNESGSDSSSKGPDGDVIDADFTDSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	0	1
AT5G23890			unknown protein		Lus10014972 [exp]	1.0	0.9289
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	3.9	0.8996
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	5.5	0.9224
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	8.9	0.9010
AT2G46900			unknown protein		Lus10036338 [exp]	10.8	0.8554
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	11.5	0.9081
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10018128 [exp]	12.6	0.8162
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	15.3	0.8887
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	16.9	0.8698
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	18.2	0.8876

Compare expression of checked genes

Lus10010496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.