Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 594 / 0 Mo25 family protein (.1) AT4G17270 551 / 0 Mo25 family protein (.1) AT2G03410 458 / 9e-163 Mo25 family protein (.1) AT5G18940 268 / 4e-88 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017565 [exp] 702 / 0 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 658 / 0 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 571 / 0 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10041405 [exp] 445 / 8e-157 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10036523 [exp] 439 / 9e-154 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10034014 [exp] 252 / 1e-81 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 238 / 1e-75 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011100 [exp] 594 / 0 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 591 / 0 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.006G014800 [exp] 588 / 0 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.002G222800 [exp] 478 / 1e-170 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 479 / 6e-170 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.019G057100 [exp] 440 / 2e-155 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 339 / 2e-117 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.010G028700 [exp] 264 / 3e-86 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.016G011300 [exp] 252 / 2e-84 AT5G47540 262 / 1e-88 Mo25 family protein (.1) Potri.008G198900 [exp] 254 / 1e-82 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08569 [flax] [poplar] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Lus10010497 pacid=23154133 polypeptide=Lus10010497 locus=Lus10010497.g ID=Lus10010497.BGIv1.0 annot-version=v1.0 ATGAAGGGGCTTTTCAAGAACAAGCCTCGTACCCCTGCTGACATCGTCCGGCAGACTCGCGATCTCCTCATGTTTGTTGATCGCTCGTCTTCCACTTACT CCGCCGATTTGCGCGAAGGTCGGCGCGAAGAGAAGATGGTGGAGTTATCTAAAAACATTAGGGAAATGAAGTCGATTCTTTATGGCGATAGCGAGGCAGA ACCTGTCGCCGAAGCTTGTGCACAGCTAACTCAAGAGTTCTTCAAAGAGAACTCGCTCCGCCTTTTCATTGTTTGTCTTCCAAAGTTGAGTTTGGAGACC CGAAAAGATGCTACTCAAGTTGTTGCTAATTTACAGAGGCAACAAGTTCAGTCTCGTCTGATTGCTTCTGATTATTTGGAAAACAATACTGATCTTCTCG ATATTCTGATGGCTGGTTATGGAATTCCGGACATGGCGTTACACTATGGGGCGATGTTGAGGGAGTGCATACGTCATCAGACTGTTGCGAGATACGTCTT GGAGTCGGAGGAAATGAAAAGATTCTTTGATTATATACAGCTCCCCAATTTCGATATTGCTGCTGATGCTGCTGCAACTTTCAAGGAACTGCTAACAAGG CATAAATCTACCGTAGCTGAATTCTTATCGAAGAACTATGACTGGTTCTTTGCAGAATACAACTCAAAGTTGCTGGAATCTGCCAACTATATAACGAGAC GGCAGGCTGTCAAGTTACTGGGTGATATATTACTGGACCGATCAAACTCCGGTGTGATGACGCGATATGTGAGCTCTAGGGATAACTTAAGGATACTTAT GAATCTGCTTAGGGAATCAAGCAAAAGCATCCAGATAGAAGCATTTCATGTTTTCAAGCTCTTTGCAGCAAATCAAAACAAACCTGCAGACATCGTAAGC ATACTCGTGGCTAACAGAAGCAAGCTTCTTCGACTGTTTGCTGATTTCAAGACGGAGAAAGAGGATGAGCAATTTGAGGCGGACAAAGCTCAGGTGGTGA GAGAAATAGCTGCCCTCGAGCCTAAAGCATGA
AA sequence Show only first row Show all	>Lus10010497 pacid=23154133 polypeptide=Lus10010497 locus=Lus10010497.g ID=Lus10010497.BGIv1.0 annot-version=v1.0 MKGLFKNKPRTPADIVRQTRDLLMFVDRSSSTYSADLREGRREEKMVELSKNIREMKSILYGDSEAEPVAEACAQLTQEFFKENSLRLFIVCLPKLSLET RKDATQVVANLQRQQVQSRLIASDYLENNTDLLDILMAGYGIPDMALHYGAMLRECIRHQTVARYVLESEEMKRFFDYIQLPNFDIAADAAATFKELLTR HKSTVAEFLSKNYDWFFAEYNSKLLESANYITRRQAVKLLGDILLDRSNSGVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVS ILVANRSKLLRLFADFKTEKEDEQFEADKAQVVREIAALEPKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	0	1
AT4G33380			unknown protein		Lus10009765 [exp]	5.3	0.8500
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	12.3	0.8272
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	12.8	0.7720
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	13.2	0.8252
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	13.4	0.8315
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	15.3	0.8235
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	16.7	0.8075
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	17.5	0.8068
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	18.8	0.8316
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	24.4	0.8012

Compare expression of checked genes

Lus10010497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.