Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 375 / 6e-128 Auxin-responsive family protein (.1) AT4G17280 364 / 8e-124 Auxin-responsive family protein (.1) AT5G35735 339 / 8e-114 Auxin-responsive family protein (.1) AT3G25290 313 / 6e-104 Auxin-responsive family protein (.1.2) AT4G12980 306 / 4e-101 Auxin-responsive family protein (.1) AT3G59070 271 / 2e-86 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 202 / 1e-60 Auxin-responsive family protein (.1) AT5G48750 177 / 5e-53 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 125 / 5e-32 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 108 / 8e-26 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017564 [exp] 674 / 0 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10012350 [exp] 350 / 2e-118 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 348 / 3e-117 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10002274 [exp] 345 / 2e-116 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10025877 [exp] 236 / 1e-74 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10006398 [exp] 231 / 4e-73 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10001736 [exp] 218 / 9e-67 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10001162 [exp] 216 / 4e-66 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10038225 [exp] 209 / 2e-65 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010900 [exp] 440 / 2e-153 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 438 / 1e-152 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 436 / 3e-152 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 414 / 1e-143 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 328 / 2e-109 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 326 / 6e-109 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 295 / 7e-97 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G095800 [exp] 286 / 4e-93 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 280 / 7e-91 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 279 / 2e-90 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10010498 pacid=23154098 polypeptide=Lus10010498 locus=Lus10010498.g ID=Lus10010498.BGIv1.0 annot-version=v1.0 ATGGCTATACCACCAAACTCCACACTTCCCCTCTTTCTCCTTCTTCTCCTCCTCCTCTTCATCTCCTCTGCAACTTCCTCTGTTTCCTCTGTTTCATCCA CCAAATGCTCAACCTACACTTTCCCAGACAACAAAACTACCTTCCCATCCTGCATAGACCTCCCATACCTAAACTCCTTCCTCCACTGGGACTACGATCC CTCCACCGGAATCCTCCGAATCGCCTACCGCCACACGTCGATCCCCTCCCCTGCCTCGACATGGGTGGCATGGGCGATCAACCCGGCCTCCCCTGCCATG ATCGGCTCCCAGGCCCTCGTAGCTTTCCATCGCCCCAGCGATGGAAAGCTGACGGCCTACACTGCCCCGGTTAATGACTACTCCACGTCGTTGACCGAGG CTAAGCTCAGCATCGACGTCAGGGACGTGGGGGCCACGTACTTGGATGGCGAGATCACCATCTTCGGGTATATCCGGCTCAACGAGAATACCTCAACGTT GAACCATGTCTGGCAGGATGGACCGGTCTCCTCAGATGGACCGGTCCAGCATTCGACGAATGGGGATAATGTTAAGTCTGCTGGGAGCTTGAATCTCTTG TCTGGAGCGTCTGGGATTGCTGGCGGAGGAAGTGATCGGATGAAGAAGCGGAATGTGGGTACTAGGAATCTTGAGTTCTGTCTTTTTTGGATATGGATTC ATGGGGTGATAAATGCATTAAGCTGGGGAATCCTGATGCCAATCGGAGCACTAACAGCAAGGTACCTGAAAGTGTTCAGATCAGCAGGTCCAGCTTGGTT CTATCTTCACATTAGCTGCCAATCTGCAGCCTACATCGTCGGGATAGCAGGCTGGATCACTGGCCTGCAACTCGGTGGCCAGTCACCGAGCATCATGTAC ACAGCACACAGGACAATCGGGATCGTCCTCTTCTGCCTAGGAGCCCTTCAGGTGTTTGCCTTGCTCCTGCGGCCAAAGACCGATCACAAGTACAGATTTC ACTGGAACGTGTACCACCATTCGGTAGGGTATGCTGTCATAACCCTGAGTGTGATCAACATCTTCAAAGGGCTGGAGATTCTGCAGCCTGACAAGAAGTG GAAGAACGGTTATATCGGTGTTATTGCTGCGCTGGGCTTCAGCACTGTGTGGCTCGAAGCCTCGACGTGGTACGTTACTGTGAAGAGGAGAATGTCGGAG ACCAATGGTCGTGATGGCGATAAGAAGGTTCCCCAGGAGCCACACAGTAGTAGCTATGGAGCTTAA
AA sequence Show only first row Show all	>Lus10010498 pacid=23154098 polypeptide=Lus10010498 locus=Lus10010498.g ID=Lus10010498.BGIv1.0 annot-version=v1.0 MAIPPNSTLPLFLLLLLLLFISSATSSVSSVSSTKCSTYTFPDNKTTFPSCIDLPYLNSFLHWDYDPSTGILRIAYRHTSIPSPASTWVAWAINPASPAM IGSQALVAFHRPSDGKLTAYTAPVNDYSTSLTEAKLSIDVRDVGATYLDGEITIFGYIRLNENTSTLNHVWQDGPVSSDGPVQHSTNGDNVKSAGSLNLL SGASGIAGGGSDRMKKRNVGTRNLEFCLFWIWIHGVINALSWGILMPIGALTARYLKVFRSAGPAWFYLHISCQSAAYIVGIAGWITGLQLGGQSPSIMY TAHRTIGIVLFCLGALQVFALLLRPKTDHKYRFHWNVYHHSVGYAVITLSVINIFKGLEILQPDKKWKNGYIGVIAALGFSTVWLEASTWYVTVKRRMSE TNGRDGDKKVPQEPHSSSYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	0	1
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	1.4	0.9415
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Lus10035671 [exp]	12.5	0.9339
					Lus10022751 [exp]	15.9	0.9006
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	17.5	0.8900
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	20.8	0.9223
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	22.4	0.9268
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	24.8	0.9167
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	26.5	0.9226
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	27.5	0.9115
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	27.8	0.9261

Compare expression of checked genes

Lus10010498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.