Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16490 505 / 1e-176 ARM repeat superfamily protein (.1) AT3G01400 244 / 2e-76 ARM repeat superfamily protein (.1) AT5G58680 232 / 8e-72 ARM repeat superfamily protein (.1) AT2G23140 234 / 2e-68 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 220 / 7e-64 ARM repeat superfamily protein (.1) AT3G54790 203 / 2e-57 ARM repeat superfamily protein (.1.2) AT1G71020 195 / 2e-56 ARM repeat superfamily protein (.1.2) AT1G23030 192 / 5e-54 PUB11 ARM repeat superfamily protein (.1) AT3G54850 191 / 1e-53 ATPUB14 plant U-box 14 (.1) AT3G46510 190 / 4e-53 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039047 [exp] 518 / 0 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10017563 [exp] 297 / 1e-98 AT4G16490 198 / 5e-61 ARM repeat superfamily protein (.1) Lus10007738 [exp] 255 / 9e-81 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10011514 [exp] 236 / 7e-68 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 234 / 5e-67 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 220 / 3e-63 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10014691 [exp] 205 / 2e-62 AT4G16490 195 / 3e-59 ARM repeat superfamily protein (.1) Lus10017562 [exp] 197 / 1e-61 AT4G16490 149 / 3e-44 ARM repeat superfamily protein (.1) Lus10011516 [exp] 211 / 8e-61 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010800 [exp] 514 / 2e-180 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 484 / 3e-168 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 229 / 1e-70 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.002G118800 [exp] 229 / 1e-70 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 234 / 4e-68 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 229 / 3e-66 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 223 / 3e-64 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 220 / 3e-63 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.001G238500 [exp] 202 / 2e-57 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 202 / 2e-57 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10010499 pacid=23154114 polypeptide=Lus10010499 locus=Lus10010499.g ID=Lus10010499.BGIv1.0 annot-version=v1.0 ATGGTTTCTCTCGACGATTCCCTCTCCCGCAGTCATCACCACCACCACCACCTCTCCAATTCCTCCCGCTTCCCTCTCCCGCGCAACGGCGTCGCCGGCA ACCATGTCTTCTACGACTTCCGCTCTCCCTCCTCCTCCACCTCCAACATCAGCCGCCTAACACCCGGCCGCTCCATGCGCACTATCCGCTCCAACCTCTA CGGTCAGCACACCGACGATGACGATGACAACAACAGCTGCTCTTCCTTCGTCTCCGCCGTCGACGCTACTCCTAACCGCTCTTCTCCTTCTCCATTCGTC TCCGAGAATTTGACAGACTCCGTCATGGACATGCGCCTCGGGGAGCTGGCCGCGAGGAGCTACGGTAACGGCTCGGGCAAATCGGATAAGTCAGGTACGG AATCTTTCTCCGGGGAGGATTATCTCAATATCTCTCAGGCGTTCAGCGATTTCTCCGGGTGTAGTAGCGATATCTCGGGCGAATTGCAGCGGTTGGCGTG CTTGCCTTCTCCTAGGCATGGAGATTGCGAATCGGCGGCGGAGAGGGAGCCGGAGATTGAGCCGGAGCCCTGCTTAGGGTTTCTGCAGAGGGAGAGTTTC TCTACGGAGATAATTGAGAGTATTTCTCCTGAGGATCTTCAGCCGACGGTCAAGATCTGCGTGGACGGGCTGAAGTCGAGTTCAGTTGCGGTGAAGCGAT CGGCTGCGGCGAAGCTGAGGCTGCTGGCGAAGAATCGGTCGGATAATCGAGCTTTGATTGGGGAGTCTGGTGCTATCCCGGCTCTAATTCCGCTTCTTCG ATGTAGCGATCCGTGGACTCAGGAGCATGCTGTTACAGCCTTGTTGAATCTGTCACTCCATGAAGGGAACAAGCAGCTGATTACCGATTCAGGAGCTGTG AAGTCTTTAGTCTATGTGCTGAAAACCGGGACTGAGACTTCCAAACAGAACGCAGCTTGTGCTTTACTAAGCCTAGCATTGGTGGAAGAGAACAAGAGCT CAATTGGAGCTTGTGGAGCTATCCCTCCGTTGGTTTCTCTGTTAATCAATGGATCCACCAGAGGTAAAAAAGATGCATTGACTACTCTATACAAGCTGTG CTCGATAGACCAGAACAAGGAGAGAGCAGTGAGTGCTGGAGCTGTGAAGCCCTTGATAATGATGGTGGCTGAGCAAGGAGCAGGCATGGCCGAGAAGGCA ATGGTGGTACTCAACAGCCTTGCAGGGATTGAAGAAGGAAGGGACACAATTGTTGAGGAAGGAGGAATTGCTGCTCTGGTGGAAGCCATAGAAGACTGTG CACCTAAAGGGAAAGACTTCTCTGTGCTGACACTGCTCCAGCTGTGCTCTGTAAGTATTAGGAACCGAGGGTTGCTGGTGAGGGAAGGTGGGATTCCTCC TCTCGTCGCCCTGTCGCAAACCGGAACTGCCCGTGCAAAGCATAAGGCAGAGTCACTTCTGGTGTACTTGAGAGAATCAAGGCAGGAGGCTTCTACTTCT TCTCCTTGA
AA sequence Show only first row Show all	>Lus10010499 pacid=23154114 polypeptide=Lus10010499 locus=Lus10010499.g ID=Lus10010499.BGIv1.0 annot-version=v1.0 MVSLDDSLSRSHHHHHHLSNSSRFPLPRNGVAGNHVFYDFRSPSSSTSNISRLTPGRSMRTIRSNLYGQHTDDDDDNNSCSSFVSAVDATPNRSSPSPFV SENLTDSVMDMRLGELAARSYGNGSGKSDKSGTESFSGEDYLNISQAFSDFSGCSSDISGELQRLACLPSPRHGDCESAAEREPEIEPEPCLGFLQRESF STEIIESISPEDLQPTVKICVDGLKSSSVAVKRSAAAKLRLLAKNRSDNRALIGESGAIPALIPLLRCSDPWTQEHAVTALLNLSLHEGNKQLITDSGAV KSLVYVLKTGTETSKQNAACALLSLALVEENKSSIGACGAIPPLVSLLINGSTRGKKDALTTLYKLCSIDQNKERAVSAGAVKPLIMMVAEQGAGMAEKA MVVLNSLAGIEEGRDTIVEEGGIAALVEAIEDCAPKGKDFSVLTLLQLCSVSIRNRGLLVREGGIPPLVALSQTGTARAKHKAESLLVYLRESRQEASTS SP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Lus10017563 [exp]	1.4	0.9433
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	4.0	0.9342
AT4G16490			ARM repeat superfamily protein...		Lus10017562 [exp]	4.2	0.9338
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	6.0	0.9118
AT5G62140			unknown protein		Lus10015008 [exp]	8.4	0.9065
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	8.8	0.9095
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	9.5	0.8983
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	10.2	0.8999
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	10.2	0.8942
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	11.4	0.9108

Compare expression of checked genes

Lus10010499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.