Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 726 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 672 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 622 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 316 / 2e-101 ATINT1 inositol transporter 1 (.1) AT4G36670 161 / 5e-43 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 153 / 4e-40 AtPLT4 Major facilitator superfamily protein (.1) AT2G16120 149 / 1e-38 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G18830 145 / 3e-37 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G18480 143 / 1e-36 AtPLT3 Major facilitator superfamily protein (.1) AT5G26250 142 / 2e-36 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039050 [exp] 978 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 951 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 739 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10017561 [exp] 732 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 723 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10042820 [exp] 603 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10028118 [exp] 603 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017560 [exp] 437 / 2e-151 AT4G16480 281 / 2e-91 inositol transporter 4 (.1) Lus10025565 [exp] 332 / 2e-107 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 810 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 769 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 740 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 335 / 8e-109 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 324 / 2e-104 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 241 / 2e-75 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 213 / 2e-65 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G158700 [exp] 187 / 2e-52 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 165 / 3e-44 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 158 / 6e-42 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10010501 pacid=23154153 polypeptide=Lus10010501 locus=Lus10010501.g ID=Lus10010501.BGIv1.0 annot-version=v1.0 ATGGTGGAAGGAGCTCCAGTGAAAGCAGACAAGACAGAGTTCACAGAATGTTGGAAAGTCTCTTGCAAGAATCCTTACATTATGAAGTTGTCGTTCGCAG CCGGCATCGCCGGCCTCCTTTTCGGCTATGACACTGGGGTAATTTCAGGGGCGTTGCTATACATAAAAGAGGACTTCGAGGAAGTAGGAAAGAGCACATT CCTCCAGGAGCTCATCGTCAGCACATGCGTCGCCGGAGCTATAATCGGCGCCGCCGTGGGTGGCTACGCGAATGACAGGTTTGGGAGAAGGAAAACGATC CTTACGGCGGATGTTCTGTTTTTCATAGGATCCATAATCATGGCCATCGCCCCTGTCCCGGGAGTCATCATCTTGGGGAGGGTGTTGGTCGGACTAGGCG TCGGAATGGCATCGATGACGGCGCCGCTCTACATTTCGGAAGCGTCGCCGGCGAAGATCCGTGGTGCCATGGTCAGCATGAACGGATTGCTCATCACCGG CGGACAGTTCTTGTCCTACCTCATTAACCTCGCCTTCACCAAAGCTCCTGGAACTTGGAGATGGATGCTTGGAGTTGCAGGGATACCTGCTGTGGTTCAG TTCTTCTTGATGTGGTCACTCCCTGAGTCCCCTAGATGGCTTTACAGAGAGAACTATGTCCTCGAGGCCAAGGAGATCCTGGAAAAGCTGTACCCAGAAG AAGAAGTGGACAGAGAGATCCAATCATTGCGAGAGTCAGTCGAAAATGAGAAGGCAATCGAGGAATCAATAGGGAAAGACGTGTTCTCCAAGCTCAAAGG TGCGTTCTCCAACAGGGTAGTCCGACGGGGACTCTACGCGGGCGTGACAGTCCAAGTGGCCCAACAATTCGTGGGGATCAACACCGTGATGTACTACTCC CCGACCATTGTCCAGTTTGCAGGGTTTGCCTCGAAATCGGTGGCCCTGGCGCTCTCGCTGATCACCTCGGGGCTCAATGCCGTCGGATCGTTCATCAGCA TGATGGTGGTGGACAAGTATGGAAGGAGGAGGTTGATGATGATCTCAATGGTCGGGATTATCGTGTGTCTTATAGTTTTGGCGGCTGTTTTTCGACTGGC GTCGCGCGATGCTCCGGGGATTGATTCGGAGGATACTAAGAAATTTGGGGTGAATGTGACTTGTCCAAGTTACTTGGAGAACTTGCATAAGCCTAAGTGG GGTTGTATGCAATGCTTGAAGGCTGAGTGTTCATTCTGTTCCAACCCACTCAACAAGAACAAGCCAGGAGCATGTCTGATCGCCGACAAGTCAACCAGAG CACTCTGCAACTCCTCCGAAAACAGAATCATCTACGAAGAAGGCTGTCCGAGCAAGATCGGATTCCTTGCCGTCATAATCCTGGGCCTATACATCATCTC CTACTCCCCTGGGATGGGTACGGCGCCCTGGATCGTCAATTCAGAGATCTACCCGCTCCGGTACAGGGGCGTCGGCGGTGGGATCGCCGCCGTGGCCAAC TGGACTTCAAACCTGACTGTCAGCTTGACATTCCTGACGATGACACAGACCCTGACGGTGGCCGGAGCTTTCCTGATGTTCGCGGCGATCTCTTTCGTAA TGCTGGTGGCGATCTTCTTCCTGGTTCCGGAGACCAAAGGGCTTCAGTTTGAGGAAGTTGAGAAGCTGCTGAGAGATGGGTACAAGCCAGGGTTCTTCAA GTTGCGTGGAGATGATGATAATCATAACAAAGACAAAGGCAAAATTGATTTATAG
AA sequence Show only first row Show all	>Lus10010501 pacid=23154153 polypeptide=Lus10010501 locus=Lus10010501.g ID=Lus10010501.BGIv1.0 annot-version=v1.0 MVEGAPVKADKTEFTECWKVSCKNPYIMKLSFAAGIAGLLFGYDTGVISGALLYIKEDFEEVGKSTFLQELIVSTCVAGAIIGAAVGGYANDRFGRRKTI LTADVLFFIGSIIMAIAPVPGVIILGRVLVGLGVGMASMTAPLYISEASPAKIRGAMVSMNGLLITGGQFLSYLINLAFTKAPGTWRWMLGVAGIPAVVQ FFLMWSLPESPRWLYRENYVLEAKEILEKLYPEEEVDREIQSLRESVENEKAIEESIGKDVFSKLKGAFSNRVVRRGLYAGVTVQVAQQFVGINTVMYYS PTIVQFAGFASKSVALALSLITSGLNAVGSFISMMVVDKYGRRRLMMISMVGIIVCLIVLAAVFRLASRDAPGIDSEDTKKFGVNVTCPSYLENLHKPKW GCMQCLKAECSFCSNPLNKNKPGACLIADKSTRALCNSSENRIIYEEGCPSKIGFLAVIILGLYIISYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVAN WTSNLTVSLTFLTMTQTLTVAGAFLMFAAISFVMLVAIFFLVPETKGLQFEEVEKLLRDGYKPGFFKLRGDDDNHNKDKGKIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	0	1
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	1.0	0.8248
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	2.2	0.7808
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	3.3	0.7710
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	5.5	0.7921
					Lus10008920 [exp]	5.8	0.8013
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	8.2	0.7882
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	11.2	0.7712
					Lus10026869 [exp]	11.8	0.7182
AT5G20610			unknown protein		Lus10025003 [exp]	12.1	0.7712
					Lus10039495 [exp]	13.0	0.7386

Compare expression of checked genes

Lus10010501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.