Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06120 187 / 8e-60 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 135 / 1e-37 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 115 / 1e-30 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 115 / 2e-30 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 110 / 2e-28 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 109 / 2e-28 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 100 / 1e-24 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 99 / 2e-24 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G46690 92 / 6e-22 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 76 / 4e-16 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034031 [exp] 266 / 3e-90 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 141 / 2e-39 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 134 / 1e-36 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 127 / 8e-35 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001066 [exp] 127 / 1e-34 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 112 / 2e-30 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 106 / 3e-28 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 103 / 6e-26 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 103 / 7e-26 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202900 [exp] 209 / 4e-68 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 145 / 5e-41 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G022300 [exp] 137 / 1e-38 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G031800 [exp] 132 / 1e-36 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 130 / 1e-35 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 126 / 9e-35 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.013G025900 [exp] 125 / 5e-34 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 121 / 5e-33 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.002G101900 [exp] 121 / 9e-33 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 122 / 1e-32 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010503 pacid=23156632 polypeptide=Lus10010503 locus=Lus10010503.g ID=Lus10010503.BGIv1.0 annot-version=v1.0 ATGTCCCACATAGCGGTAGAGAGGAATCGGAGGAGGCAGATGAATGAGAATCTCACAGTCTTGCGATCTCTAACCCCTCGCATCTACATCAAAAGGGGGG ACCAAGCATCGATCATAGGGGGAGTGATAGAGTTCATAAAAGAGCTGCACCACCTACTTCAAGCACTGGAGTCCAAAAAGCAAGTGCGGTTGAGTCTGAG CCCTAGCAGTGCTAGTAGCCCTACCCCACGTCATCATATGTTGCAGCTCATGCCACCAGCTGTATCTACTACTTCCGATCATCATATAATGAATGTAAAG GAGGAGTATTCGGAGTCGCAGCAGCAGCTGGGGACATGTTGCAACTCCCCGGTTGCTGACGTGGAAGCAAAGCTAACAGGATCCAATGTGGAGTTGAAGG TGATATCGAGCAGGGTAAAGGGTCAGGTTGTGAAGATGGTAAGTGTGCTGGAGATGCTGTCGTTCGAGGTACTCCATCTCAACATCAGTAGCATGGATGA TACTGTCCTCTACTCCTTTCTCCTTAAGGAGCATCCCAGTAAATGGAGCAAACAAACAACAGTCTGTGATGTGAGATGGATGGAACACAAATATAGCAAT GGATGGAAGGAAGATGGAGATTTATTAATGAGATGCAATCTGAGAGAGACGGTTGCAAGTAGCCAAGTAGGAGTGGATGTAGGAGATGATGAGAAAACCA AGGACGGAGGAGACAGGAAAAGGTGGGATTAA
AA sequence Show only first row Show all	>Lus10010503 pacid=23156632 polypeptide=Lus10010503 locus=Lus10010503.g ID=Lus10010503.BGIv1.0 annot-version=v1.0 MSHIAVERNRRRQMNENLTVLRSLTPRIYIKRGDQASIIGGVIEFIKELHHLLQALESKKQVRLSLSPSSASSPTPRHHMLQLMPPAVSTTSDHHIMNVK EEYSESQQQLGTCCNSPVADVEAKLTGSNVELKVISSRVKGQVVKMVSVLEMLSFEVLHLNISSMDDTVLYSFLLKEHPSKWSKQTTVCDVRWMEHKYSN GWKEDGDLLMRCNLRETVASSQVGVDVGDDEKTKDGGDRKRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	0	1
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017056 [exp]	1.4	0.8993
AT3G22250			UDP-Glycosyltransferase superf...		Lus10035452 [exp]	4.2	0.8463
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	5.1	0.8754
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10008483 [exp]	8.1	0.7775
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	8.4	0.8360
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021795 [exp]	8.6	0.7992
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	8.7	0.8745
					Lus10009852 [exp]	9.1	0.7957
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10009589 [exp]	14.1	0.8464
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	17.1	0.8480

Compare expression of checked genes

Lus10010503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.