Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19140 392 / 3e-140 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT5G43830 210 / 5e-68 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 197 / 6e-63 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 187 / 5e-59 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT4G27450 185 / 2e-58 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G65010 57 / 2e-09 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 56 / 9e-09 ASN3 asparagine synthetase 3 (.1.2) AT3G47340 50 / 5e-07 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034038 [exp] 457 / 7e-166 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10041181 [exp] 206 / 2e-66 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 201 / 1e-64 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 200 / 5e-64 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 190 / 4e-60 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 189 / 6e-60 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 174 / 7e-54 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10011191 [exp] 168 / 2e-51 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10021899 [exp] 79 / 2e-16 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203400 [exp] 432 / 6e-156 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.008G158400 [exp] 213 / 2e-69 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 211 / 2e-68 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 186 / 1e-58 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 184 / 7e-58 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 184 / 8e-58 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 180 / 3e-56 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.009G072900 [exp] 54 / 2e-08 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 52 / 1e-07 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10010505 pacid=23156695 polypeptide=Lus10010505 locus=Lus10010505.g ID=Lus10010505.BGIv1.0 annot-version=v1.0 ATGTTGGGAGTCTTCAGCAGCACGATCATGTCCCCGCCGGATGAGCTTGTGGCAGCCGGTAGCAGGACTCCGTCTCCGAAGATGACGTCGGACTCTCTGG TGAAGAGGTTCCTCGACGCCAACTCCTCCGCCGTTTCGGTTCAGGTAGGAGACAACGCTCATCTGGCTTACTCTCACTCAAACCAGCCGCTCCTTCTTCC CAGATCGTTCGCGGTGAAGGATGAGATATTCTGCTTGTTCGAAGGGGCTCTGGACAACTTGGGAAGCCTGAGACAGCAGTACGGGCTAGCGAAATCGGCG AACGAGGTTGTGCTAGTGATAGAGGCTTACAAGGCGCTGCGTGACAGGGCACCTTACCCTGCTAATCATGTTGTTGGCCACCTCAGTGGCAGCTTTGCTT TCATCGTATTTGACAAGTCCACCTCCACCTTATTCGTTGCTTCTGATCAATTCGGGAAGGTGCCACTTTACTGGGGAATCACAGCTGACGGGTACGTGGC GTTCGCTGATGATGCGGAGCTGCTGAAAGGTGCTTGTGGCAAGTCCCTCGCTTCTTTCCCTCAAGGATGCTTCTTCTCGACTGCAGTTGGTGAGCTGAGG AGCTTCGAGAATCCAAAGAACAAGATCACTGCAGTTCCTGCCAAAGAAGAGGAGATGTGGGGTGCAACCTTTAAGGTGGAAGGGCCAGCAGCAGTCCTTG CCGTCACAAAATAG
AA sequence Show only first row Show all	>Lus10010505 pacid=23156695 polypeptide=Lus10010505 locus=Lus10010505.g ID=Lus10010505.BGIv1.0 annot-version=v1.0 MLGVFSSTIMSPPDELVAAGSRTPSPKMTSDSLVKRFLDANSSAVSVQVGDNAHLAYSHSNQPLLLPRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSA NEVVLVIEAYKALRDRAPYPANHVVGHLSGSFAFIVFDKSTSTLFVASDQFGKVPLYWGITADGYVAFADDAELLKGACGKSLASFPQGCFFSTAVGELR SFENPKNKITAVPAKEEEMWGATFKVEGPAAVLAVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	0	1
AT1G70160			unknown protein		Lus10029209 [exp]	2.0	0.9393
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	2.0	0.9365
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	3.5	0.9337
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	6.0	0.9203
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	6.4	0.8886
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	7.7	0.9207
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	8.4	0.9162
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	9.5	0.9022
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	10.8	0.8592
AT1G04555			unknown protein		Lus10014458 [exp]	11.3	0.9208

Compare expression of checked genes

Lus10010505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.