Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19190 77 / 1e-18 unknown protein AT3G06070 75 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034044 [exp] 174 / 1e-57 AT3G06070 92 / 7e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204100 [exp] 103 / 1e-29 AT3G06070 96 / 2e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010508 pacid=23156652 polypeptide=Lus10010508 locus=Lus10010508.g ID=Lus10010508.BGIv1.0 annot-version=v1.0 ATGGAGTTTGAAGATGATTTGTTCTTTGCAGACTTGAGCAAGCAGATTTCTCTTCTGATTATGGATGATGATGAGGAAGACCAAGTTGCTGTTTCCTCTT CAGTTTCCTTTCAGGCATACTCAATATCCAATTACCCAACAGCAGTACAATCTCCTTTCATGTATGAGCAGATCAGTTGCAGAAGGGAGAGCAAAGGGAC AGGTGTCTTTATCCCACAGTCATCACTTCCAAGGAGGAAGCAGAGGCAAGGCAGATACAGTAACACAAAAGGCCAGAGAAAGCAGCAAGACAACAACAAC AACACAAGAATGGTTTCTCAAGTATCTTACAGCAATTCGTATAGCTCATCAAAGAAGGGCTAA
AA sequence Show only first row Show all	>Lus10010508 pacid=23156652 polypeptide=Lus10010508 locus=Lus10010508.g ID=Lus10010508.BGIv1.0 annot-version=v1.0 MEFEDDLFFADLSKQISLLIMDDDEEDQVAVSSSVSFQAYSISNYPTAVQSPFMYEQISCRRESKGTGVFIPQSSLPRRKQRQGRYSNTKGQRKQQDNNN NTRMVSQVSYSNSYSSSKKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06070			unknown protein		Lus10010508 [exp]	0	1
AT3G06070			unknown protein		Lus10034044 [exp]	3.0	0.9287
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	6.9	0.8294
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	8.7	0.8271
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	9.3	0.8047
AT1G60010			unknown protein		Lus10010708 [exp]	9.4	0.8704
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	10.2	0.8654
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	10.7	0.8083
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	10.7	0.8598
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	11.1	0.8054
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	14.4	0.8703

Compare expression of checked genes

Lus10010508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.