Plant FIBer expression Database

Lus10010511 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06060 106 / 2e-29 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
AT5G19200 89 / 2e-22 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010509
[exp]
170 / 1e-55 AT3G06060 278 / 3e-94 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10024146
[exp]
124 / 6e-36 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10039501
[exp]
116 / 2e-34 AT3G06060 260 / 2e-87 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10034045
[exp]
72 / 1e-17 AT3G06060 176 / 2e-55 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G191800
[exp]
127 / 2e-37 AT3G06060 448 / 2e-159 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10010511 pacid=23156676 polypeptide=Lus10010511 locus=Lus10010511.g ID=Lus10010511.BGIv1.0 annot-version=v1.0
ATGAAAGCTGAGGATGTTGCTAGGAAGTGTTTGGATGGGATCAAGTCTGCAAGTTTCTTTGTGCCTTGCAACTTCGAGGGTGTGATGCTATCCATCGCAA
CGGCTGGTTTATCGCCTCAAAGATCGTTCCTGATGGCATTCGTCGAGGTATTTGCTATCGGTCTGATGCGACTTGTAGCATTGTTCTTCCAGTGGAATTG
GTACGGCAGCATTGCAAAATGGCATGCGAAATCTGGTAATGCGCAAGGATGTAATTTTGAAACCTAG
AA sequence
>Lus10010511 pacid=23156676 polypeptide=Lus10010511 locus=Lus10010511.g ID=Lus10010511.BGIv1.0 annot-version=v1.0
MKAEDVARKCLDGIKSASFFVPCNFEGVMLSIATAGLSPQRSFLMAFVEVFAIGLMRLVALFFQWNWYGSIAKWHAKSGNAQGCNFET

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06060 TSC10A TSC10A, NAD(P)-binding Rossman... Lus10010511
[exp]
0 1
AT3G06060 TSC10A TSC10A, NAD(P)-binding Rossman... Lus10010509
[exp]
2.6 0.9449
AT5G19200 TSC10B TSC10B, NAD(P)-binding Rossman... Lus10010510
[exp]
8.0 0.9157
Lus10024121
[exp]
11.7 0.9097
AT5G56040 Leucine-rich receptor-like pro... Lus10018094
[exp]
13.9 0.9147
AT3G55230 Disease resistance-responsive ... Lus10030318
[exp]
19.9 0.9034
AT5G10720 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histi... Lus10020115
[exp]
22.6 0.9010
AT2G28670 ESB1 ENHANCED SUBERIN 1, Disease re... Lus10006317
[exp]
23.5 0.8959
AT4G04980 unknown protein Lus10036174
[exp]
27.1 0.8379
AT4G23740 Leucine-rich repeat protein ki... Lus10027568
[exp]
27.9 0.9023
AT2G28670 ESB1 ENHANCED SUBERIN 1, Disease re... Lus10029585
[exp]
28.6 0.8962

Lus10010511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.