Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 179 / 2e-52 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 131 / 2e-34 RHF1A RING-H2 group F1A (.1) AT5G38895 63 / 2e-11 RING/U-box superfamily protein (.1.2.3) AT5G41350 62 / 7e-11 RING/U-box superfamily protein (.1) AT4G00335 61 / 1e-10 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 61 / 2e-10 RING/U-box superfamily protein (.1.2) AT5G15790 60 / 4e-10 RING/U-box superfamily protein (.1.2) AT4G23450 56 / 3e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT3G58720 54 / 4e-08 RING/U-box superfamily protein (.1.2) AT4G31450 54 / 1e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034049 [exp] 652 / 0 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10013606 [exp] 182 / 9e-54 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 179 / 3e-52 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 147 / 8e-41 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 131 / 7e-34 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 128 / 8e-34 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 130 / 1e-33 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10004636 [exp] 57 / 9e-10 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10011380 [exp] 58 / 2e-09 AT5G53910 61 / 4e-11 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092300 [exp] 273 / 2e-88 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.008G149300 [exp] 260 / 3e-83 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.016G066400 [exp] 191 / 5e-57 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 182 / 2e-53 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 176 / 5e-51 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.010G140300 [exp] 64 / 2e-11 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.014G087000 [exp] 64 / 2e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 61 / 9e-11 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.001G068700 [exp] 61 / 1e-10 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 61 / 2e-10 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010513 pacid=23156704 polypeptide=Lus10010513 locus=Lus10010513.g ID=Lus10010513.BGIv1.0 annot-version=v1.0 ATGGCTGCCTGTGACATTCCACTCTTTTCAACTCCTGGGTCTTCTTCAGCTAGCAATACTCCAATTGACGACAGCTATGAAGAAGCCTGCAGTATCTGCC TCGACCCTTTCACTGTGCAAGACCCTGCGACTGTAACCAATTGCAAACACGAATACCATCTACAGTGTATTCTCGATTGGTGCCAGAGAAGCAAAGAATG CCCTATTTGTTGGCAACTTCTTTCCCTTAAAGACCAATCAAGTCAAGAGCTTTTGCTTGCTGTTGAGGCAGAGAGACATTCACGATTAAGGACCCAAACT CGTCCTGCATCCGTTACTAGGCCTTACCTCTATGAACATTTTGATGTCGAACAGGACTCTTATTCAGATGACTCTGACTTTGATGAGCGCATAGGGCAGC ACCTAGCTGCTGCTGTGTATAGAGCTCGCCAGTTCCAGAGAAGGGATAATAGGTCGCCACCGCGACTCAGTACCTCTAGGTTATTTGTCTATGCCTCCAA CAATGGTGGTTTCAGGAATGATCAACAAAGTTCACCTGGAGGCAGCAGTTTGAGCCCTGGGTCGTCTGGAACCACTTCACCAATTTCTCCGATGGCTCCT CCTTCACTTTCAAACTACCACAGCTCTGAAAATCCGGTCGTCAATGACAACCAAGATGGCCTATTCAGGACCAGGATTTTCATTGGACAGTCGCGAGCTG ATAACCATGATGAGCCCGGTTCTTCAAAGATGCTGTCATTGTCGGACTCCATCAAATCGAAATGGGTTGCTGCTTCATCCAAGTACAAGGAATCGATCAC AAAAGGCACTCAAGGTATAAAGGAGAAGTTGCTTGCACGGAACAACTCTGTTAAGGAGCTGAGCAAAGGAGTGCAGCGAGAGATGAGTGCTGGAATCGCT GGTGTTGCACGAATAATTGATCGATTGGAGCTTTCCTCAAAACGCAATGGTGGGAGTGCCAGCCCTGTCTCTGGGGAAGCCTCGAGTTTATGTTTCAAGG GCAAAGCTGTGGAAGACAACTCTCTGGCTCGAGCATTTGAAGAAGAGGCAAGGTTGGAACAAGGTATAAGATTTAATGATGCGAATCCCGCCCCGTGCCA TCCAGAAGCTCCCCATGTCCAGGTTGGTTACAATAACTCAGTTCGATCTATTACTACATCACTGTGTCATAATAACAGTTTTCTTAGTTAG
AA sequence Show only first row Show all	>Lus10010513 pacid=23156704 polypeptide=Lus10010513 locus=Lus10010513.g ID=Lus10010513.BGIv1.0 annot-version=v1.0 MAACDIPLFSTPGSSSASNTPIDDSYEEACSICLDPFTVQDPATVTNCKHEYHLQCILDWCQRSKECPICWQLLSLKDQSSQELLLAVEAERHSRLRTQT RPASVTRPYLYEHFDVEQDSYSDDSDFDERIGQHLAAAVYRARQFQRRDNRSPPRLSTSRLFVYASNNGGFRNDQQSSPGGSSLSPGSSGTTSPISPMAP PSLSNYHSSENPVVNDNQDGLFRTRIFIGQSRADNHDEPGSSKMLSLSDSIKSKWVAASSKYKESITKGTQGIKEKLLARNNSVKELSKGVQREMSAGIA GVARIIDRLELSSKRNGGSASPVSGEASSLCFKGKAVEDNSLARAFEEEARLEQGIRFNDANPAPCHPEAPHVQVGYNNSVRSITTSLCHNNSFLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	0	1
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	2.6	0.8927
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	3.2	0.8842
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	3.5	0.8812
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	4.2	0.8770
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	5.5	0.8732
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	5.7	0.8738
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	5.9	0.8779
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	8.7	0.8517
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	10.4	0.8251
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	10.6	0.8782

Compare expression of checked genes

Lus10010513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.