Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19210 436 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G12770 92 / 2e-20 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77030 79 / 7e-16 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G63630 77 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 76 / 7e-15 DEA(D/H)-box RNA helicase family protein (.1) AT5G11200 72 / 1e-13 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 72 / 1e-13 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G19760 71 / 1e-13 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT5G60990 71 / 2e-13 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 70 / 4e-13 ATRH8 RNAhelicase-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034052 [exp] 565 / 0 AT5G19210 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028644 [exp] 85 / 9e-18 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10018941 [exp] 84 / 2e-17 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10026871 [exp] 80 / 3e-16 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013644 [exp] 79 / 7e-16 AT3G09720 614 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010686 [exp] 79 / 7e-16 AT1G12770 647 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 79 / 9e-16 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 78 / 1e-15 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10038140 [exp] 77 / 1e-15 AT1G12770 390 / 2e-132 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092200 [exp] 483 / 6e-171 AT5G19210 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G185900 [exp] 81 / 2e-16 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.003G123600 [exp] 76 / 8e-15 AT1G12770 711 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G124100 [exp] 75 / 1e-14 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G065300 [exp] 73 / 5e-14 AT3G09720 652 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 72 / 7e-14 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G093900 [exp] 71 / 1e-13 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G253100 [exp] 71 / 2e-13 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.007G070000 [exp] 71 / 3e-13 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G249100 [exp] 70 / 4e-13 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10010514 pacid=23156683 polypeptide=Lus10010514 locus=Lus10010514.g ID=Lus10010514.BGIv1.0 annot-version=v1.0 ATGGCCACGTTCCCACTCTCAGGGAACTCTGACAAGGGCGGTTCTGATGAGGGGTTTGGCAGGGCGGAAGAGGTCGGATATGTTATGCCGACGGATGTGC CGGAGAAAGCTCTGCCTGTTCTTTTTAGTGGGCAGGATTGTATTGTTCATGCTCAAGTTGGTTCTGGGAAGACACTTGCTTACTTGTTGCTGATATTCTC TGTGGTAAATGCTAAGAGATCAGCTGTGCAGGCACTGATTGTGGTTCATACCCGAGAACTAGGAATTCAAGTAACAAAAGTGGCTCGAATGTTGGCTTCG AAATCTGTGGATAGTGAGATAGAGCAGAAGTCGTCGGTCACTATCATGGCTCTTTTAGATGGAGGAATGCTGAAAAGACACAAGAGTTGGCTAAAGGCAG AACCACCTACTATAGTGGTAGCAACAATAGCAAGCTTGTGTCAAATGCTTGACAAGCACGTGTTTAAGCTTGATGCCATAGAGGTGCTGGTTATAGACGA GGTAGATTTTTTGTTCAACTCATCGAAGCAAGTCAGTTCGCTCAAAAAGCTATTGACTTTATATTCATCAAGCGGCAGTCGGCAAACTGTTTTTGCCAGT GCATCCATCCCGCAGCACAAGAGATTTTTGTATGACTGCATACAACAGAAATGGACCAAGAGGGATGTGGTCCATGTGCATGTGAATGCAATCAAGCCCA TGCCATCCTGCTTGCAGCACAGATTTGTGGTATGCTCAGACAAACAGAGACATGAAGTTTTGCGTTCCCTACTACATAGTGAAGCTCCCAAGTCGGCAAT CATATTTGTTGGTGAACAGGCTGGAAATGCTCCATCGACTATTCTTTTGGTTGAGTTTTTGAGAGTCTCTTATAGAGGTTATTCAGAAATCCTCCTTTTG GAGAAGGACATGAATTTCAATTCACGAGCAGCTTCACTTTCGGAAATGAGGCAAGGAGATGGTTATCTCCTCGTAGCAACAGATATAGCTGCTAGATGA
AA sequence Show only first row Show all	>Lus10010514 pacid=23156683 polypeptide=Lus10010514 locus=Lus10010514.g ID=Lus10010514.BGIv1.0 annot-version=v1.0 MATFPLSGNSDKGGSDEGFGRAEEVGYVMPTDVPEKALPVLFSGQDCIVHAQVGSGKTLAYLLLIFSVVNAKRSAVQALIVVHTRELGIQVTKVARMLAS KSVDSEIEQKSSVTIMALLDGGMLKRHKSWLKAEPPTIVVATIASLCQMLDKHVFKLDAIEVLVIDEVDFLFNSSKQVSSLKKLLTLYSSSGSRQTVFAS ASIPQHKRFLYDCIQQKWTKRDVVHVHVNAIKPMPSCLQHRFVVCSDKQRHEVLRSLLHSEAPKSAIIFVGEQAGNAPSTILLVEFLRVSYRGYSEILLL EKDMNFNSRAASLSEMRQGDGYLLVATDIAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19210			P-loop containing nucleoside t...		Lus10010514 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	6.5	0.7982
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	8.8	0.7992
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	11.3	0.8428
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	14.9	0.8458
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	19.7	0.8233
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	22.4	0.7316
AT5G58720			smr (Small MutS Related) domai...		Lus10040668 [exp]	29.7	0.7962
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	36.5	0.7955
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	37.1	0.7962
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	40.0	0.7970

Compare expression of checked genes

Lus10010514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.