Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19220 827 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 671 / 0 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 623 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 600 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT5G48300 500 / 3e-173 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 333 / 2e-108 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034053 [exp] 1017 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 656 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 640 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10023553 [exp] 635 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 601 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10025187 [exp] 500 / 2e-173 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 499 / 4e-173 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 305 / 3e-97 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 266 / 7e-83 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195100 [exp] 863 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G110000 [exp] 690 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 680 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 678 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 650 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 643 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.014G171800 [exp] 500 / 2e-173 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.007G146100 [exp] 344 / 5e-113 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 337 / 2e-109 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010515 pacid=23156700 polypeptide=Lus10010515 locus=Lus10010515.g ID=Lus10010515.BGIv1.0 annot-version=v1.0 ATGGCAGTATCAGCCGACGCCCGGTTCTCCATCACCACGTCCCGCTGCACCAACGGGAGCTGGTTGTCGAAGCTCGGCAATGGTGGGTTCATGGGGAGTA AGATGAAGATTACACCACCGTTGTTGTTCCATGGAAGGAGGAGTCTTGCAAGTATTAAACTTGCTAAGCAACGTATAGAATGCATGACTATCGCAGATGA TGTATTTATTGGTTCTAAGTTGAGAGACATAGAGATGGAGAAGAGGGACCCTAGAACGGTTGTGGCAATCATTCTTGGAGGTGGCGCTGGTACTCGCCTT TTCCCCCTCACCAAACGCCGTGCTAAACCTGCTGTCCCGATTGGAGGTGCATACCGCCTAATCGATGTGCCAATGAGCAACTGCATCAACAGTGGGATCA ACAAGGTGTACATTCTCACTCAGTTCAACTCGGCTTCGCTCAACAGGCATATTTCACGAGCTTACAGCTTTGGCAATGGCACCAACTTCGGAGATGGCTA TGTCGAGGTTCTAGCTGCAACTCAAACTCCAGGGGAGACCGGGAAGAAGTGGTTCCAAGGCACTGCAGATGCCGTTCGACAGTTCCATTGGTTGTTTGAG GATGCTCGAAGTAAGGAGATTGAAGACGTTCTGATACTATCAGGAGATCACCTGTACCGTATGGACTACATGGACTTTGTACATAATCATAGGCAGAGTG GGGCAGACATCACAATTTCTTCACTGCCAATAGATGACAGTCGAGCCTCGGATTTCGGACTAATGAAGATAGACAACAAAGGAAGGGTCCTCTCCTTCAG TGAAAAGCCTAGAGGGGCTGAACTCAAGGCAATGGCAGTTGACACAACAGTACTAGGGCTCTCGAAAGATGAAGCTGAGAAGAAACCTTACATTGCCTCC ATGGGAGTTTACCTCTTCAAGAAGGAGATTCTTCTCAATCTTCTCAGATGGCGATTTCCAACAGCCAACGACTTTGGATCAGAGATAATCCCAGCTTCAG CGAAGGAGTTCCATGTGAAGGCTTATTTGTTCAACGATTACTGGGAAGATATTGGGACAATCAGATCATTCTTCGAGGCAAATCTCGCTCTTACAGAGCA TCCACCAAGATTTAGTTTCTATGATGCAGCAAAGCCAATTTTCACATCAAGGAGAAACCTGCCACCAAGCAAGATCGACAACAGCAAGGCCAGCACTTCT AGCTTATTAGATTGTGTTAGTTACTTACCATGTCAGAAAGCAGCTCATGAAGAATCCTGGTCTTTTGTTTTGCAGATTGTTGATTCAATCATTTCTCATG GAAGCTTCTTAACAGACTGCCACATTGAACATAGTGTTATTGGCATCCGGTCTCGAATCAATGCAAATGTCCAATTAAAGGATACAGTCATGTTAGGAGC TGACTTCTATGAAACTGAATCTGAAGTAGCTGCTCTGGCAGCTGAAGGAAGAGTCCCTGTTGGAATAGGAGAAAACACTAAAATCAGAGAATGCATTATC GACAAAAATGCCCGAATTGGGAAGAATGTTATCATTGCCAACTCGGAGGGTGTACAAGAGGCTGACAGATCTTCTGAAGGATTCTACATACGATCTGGGG TTACAGTGATATTGAAAAACTCGGTCATTGAAGATGGACTTATAATATAA
AA sequence Show only first row Show all	>Lus10010515 pacid=23156700 polypeptide=Lus10010515 locus=Lus10010515.g ID=Lus10010515.BGIv1.0 annot-version=v1.0 MAVSADARFSITTSRCTNGSWLSKLGNGGFMGSKMKITPPLLFHGRRSLASIKLAKQRIECMTIADDVFIGSKLRDIEMEKRDPRTVVAIILGGGAGTRL FPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHISRAYSFGNGTNFGDGYVEVLAATQTPGETGKKWFQGTADAVRQFHWLFE DARSKEIEDVLILSGDHLYRMDYMDFVHNHRQSGADITISSLPIDDSRASDFGLMKIDNKGRVLSFSEKPRGAELKAMAVDTTVLGLSKDEAEKKPYIAS MGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAKEFHVKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPIFTSRRNLPPSKIDNSKASTS SLLDCVSYLPCQKAAHEESWSFVLQIVDSIISHGSFLTDCHIEHSVIGIRSRINANVQLKDTVMLGADFYETESEVAALAAEGRVPVGIGENTKIRECII DKNARIGKNVIIANSEGVQEADRSSEGFYIRSGVTVILKNSVIEDGLII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	0	1
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	1.7	0.9427
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	3.5	0.9373
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	4.2	0.9317
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	4.7	0.9426
AT3G25410			Sodium Bile acid symporter fam...		Lus10025862 [exp]	5.1	0.9175
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018389 [exp]	5.3	0.9161
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	8.2	0.9368
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	8.7	0.9361
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	12.0	0.9275
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	12.4	0.9088

Compare expression of checked genes

Lus10010515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.