Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06035 218 / 1e-72 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19250 207 / 2e-68 Glycoprotein membrane precursor GPI-anchored (.1) AT1G54860 146 / 4e-44 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19240 141 / 3e-42 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19230 124 / 1e-35 Glycoprotein membrane precursor GPI-anchored (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034054 [exp] 318 / 9e-112 AT3G06035 220 / 2e-73 Glycoprotein membrane precursor GPI-anchored (.1) Lus10004470 [exp] 135 / 6e-40 AT1G54860 190 / 2e-61 Glycoprotein membrane precursor GPI-anchored (.1) Lus10029938 [exp] 135 / 2e-36 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033400 [exp] 239 / 6e-81 AT3G06035 214 / 4e-71 Glycoprotein membrane precursor GPI-anchored (.1) Potri.008G195000 [exp] 239 / 7e-81 AT3G06035 231 / 2e-77 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034400 [exp] 144 / 1e-43 AT1G54860 167 / 6e-53 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023801 [exp] 109 / 1e-30 AT1G54860 102 / 4e-28 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034200 [exp] 88 / 1e-21 AT1G54860 110 / 2e-30 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034300 [exp] 77 / 2e-17 AT1G54860 99 / 5e-26 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023701 [exp] 60 / 1e-11 AT1G54860 62 / 8e-13 Glycoprotein membrane precursor GPI-anchored (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010516 pacid=23156684 polypeptide=Lus10010516 locus=Lus10010516.g ID=Lus10010516.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCTTCAAGGCTTCCCCTTTACCTCCTCCTTGCTTCCTTCCTCATCTCTGCTCTTCTCTTCATTGACCCTGTTCGCTCTGACGATGAAGATG ATAAGCTTCTTCAAGGCATCAACGGCTATAGAAGAAGCTTGAACCTGACCTCCCTAACGGGGAATGACAATGCAGAATGCCTTGCTGGCGAAATAGCAGA TCAATTCAAGGGTAAACCTTGCACCAACTCCACAGGAGCCAACACTGTGCCTGGAACCGAGCCTCAGCTTCCCAACTACCCAAGCCTCCTGGTCAAATGC CATTTGAATGTCTCCAACACCAGGGATGGAGCTGTAATGCCTGCCTGCGTTCCCAACCTCGATCCCGCTCTCGTGCTTACTAACTTCACCATGAGCCAGT ACTCTGACAGTCTGAACGACACCAAGTATACAGGAGTCGGCATTGGTATCGAAGGTGACTGGATCGTCGTTGTTCTCTCCACCAGCACTCCTGATGGAAG CTTTGCCACTTACAAAGGAGGAGAATCAGCCGGTGGTGGGATGAGGACTGCAACCGGTCTGACTTCTCTGTTGCTGCTACTTCTGCTGGTGGCATCTCTA CTTCAGCTGTAA
AA sequence Show only first row Show all	>Lus10010516 pacid=23156684 polypeptide=Lus10010516 locus=Lus10010516.g ID=Lus10010516.BGIv1.0 annot-version=v1.0 MPSSSRLPLYLLLASFLISALLFIDPVRSDDEDDKLLQGINGYRRSLNLTSLTGNDNAECLAGEIADQFKGKPCTNSTGANTVPGTEPQLPNYPSLLVKC HLNVSNTRDGAVMPACVPNLDPALVLTNFTMSQYSDSLNDTKYTGVGIGIEGDWIVVVLSTSTPDGSFATYKGGESAGGGMRTATGLTSLLLLLLLVASL LQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	0	1
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	2.6	0.9240
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	5.3	0.9190
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	7.7	0.9142
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	8.8	0.8959
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	9.2	0.9134
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	9.7	0.9066
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	9.9	0.8954
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	10.1	0.9033
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	13.1	0.8860
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	13.4	0.9024

Compare expression of checked genes

Lus10010516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.