Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05290 426 / 1e-150 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 420 / 2e-148 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT2G39970 87 / 3e-19 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 86 / 4e-19 ATFOLT1 folate transporter 1 (.1) AT5G07320 61 / 3e-10 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 58 / 2e-09 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G53940 58 / 3e-09 Mitochondrial substrate carrier family protein (.1) AT1G34065 55 / 2e-08 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G37890 53 / 8e-08 Mitochondrial substrate carrier family protein (.1) AT4G39460 49 / 2e-06 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034055 [exp] 581 / 0 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10015188 [exp] 416 / 1e-146 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10031510 [exp] 408 / 1e-143 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 99 / 3e-23 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 96 / 3e-22 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 78 / 2e-16 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032690 [exp] 66 / 8e-12 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 65 / 2e-11 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 56 / 9e-09 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092100 [exp] 471 / 2e-168 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.013G023200 [exp] 434 / 7e-154 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1) Potri.005G033800 [exp] 433 / 1e-153 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G192600 [exp] 94 / 1e-21 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 85 / 2e-18 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.002G000200 [exp] 77 / 2e-15 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 72 / 3e-14 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 64 / 4e-11 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.010G121500 [exp] 63 / 7e-11 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.012G110700 [exp] 57 / 9e-09 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10010517 pacid=23156672 polypeptide=Lus10010517 locus=Lus10010517.g ID=Lus10010517.BGIv1.0 annot-version=v1.0 ATGGGTGGGATTGATCTGGAGTCATTGTCTGACGCAACTTCAGGAGCTATTGCTTCATTGATAAGCACAACTGTGTTGTACCCTCTCGACACCTGCAAGA CCAAATACCAAGCTGAGCTCCGTGCTCGGCACCAACGCAAGTACAGGAGCGTTGCTGATGTTTTCTGGGAGGCAGTTCGCACCAGGCAGCTTCTTTCCTT GTACCAAGGACTTGGCACCAAGAATATCCAGTCTTTTGTTTCCTCCTTCCTCTATTTCTATGGGTATACTTTCTTCAAGAGGCTCTACTTGGACAAAACT GGCAACACTTCCATGGGGACTAAGGTTAACTTGTTGATTGCTGCTGCTGCTGGCGCTTACGCCGTCACCTTGACCATGCCATTGGATACAGCAGCTTCTA GGATGCAAACCACCGAATTTGGAAAGTCAAAAGGACTGTGGGAGACCCTTTCAGAGGGCACTTGGAGTGAGGCATTTGATGGCCTTGGGATATCATTGCT TCTCACATCCAACCCTGCCATCCAGTACACTGTATTTGATCAGTTGAAACGAAGACTACTTAATAAGGAAAGAAGATCAGGTGCTGCTGCTGATTCGTCT CCGGCGACACTTTCTGCTTTCACAGCTTTTGTTCTTGGTGCTGGTACCAAGTGTATTGCCACCACCTTCACTTACCCTGCAATCAGATGCAAAGTGATGC TTCAGGCTGCAGAATCAGATGAAAACGGAACTGCAGAGGTCCTTCCAAAAGATAAGAGGACGATCTCGGGAGCTACGCGTGCCATCTGGAAAAGAGAGGG CTTGTCCGGTTTCTTCAAAGGATTGTTAGCTCAGCATTTGAAAACAATACTGAGTTCGGCATTGCTTCTGATGGTCAAAGAGAAGATAACAAAGACAACA TGGGTCCTTATATTGGCAATTCACAAGTACCTGTTCCTCCAACGTACCAGAATCAAGAGCATTTGA
AA sequence Show only first row Show all	>Lus10010517 pacid=23156672 polypeptide=Lus10010517 locus=Lus10010517.g ID=Lus10010517.BGIv1.0 annot-version=v1.0 MGGIDLESLSDATSGAIASLISTTVLYPLDTCKTKYQAELRARHQRKYRSVADVFWEAVRTRQLLSLYQGLGTKNIQSFVSSFLYFYGYTFFKRLYLDKT GNTSMGTKVNLLIAAAAGAYAVTLTMPLDTAASRMQTTEFGKSKGLWETLSEGTWSEAFDGLGISLLLTSNPAIQYTVFDQLKRRLLNKERRSGAAADSS PATLSAFTAFVLGAGTKCIATTFTYPAIRCKVMLQAAESDENGTAEVLPKDKRTISGATRAIWKREGLSGFFKGLLAQHLKTILSSALLLMVKEKITKTT WVLILAIHKYLFLQRTRIKSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	0	1
AT5G08010			unknown protein		Lus10040520 [exp]	1.7	0.9012
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	2.0	0.8885
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	3.9	0.8653
AT5G46560			unknown protein		Lus10011046 [exp]	4.0	0.8674
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	4.9	0.8794
AT1G44920			unknown protein		Lus10018656 [exp]	5.2	0.8430
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	7.1	0.8305
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	8.9	0.8483
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	9.8	0.8348
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	10.0	0.8410

Compare expression of checked genes

Lus10010517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.