Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031757 [exp] 128 / 1e-37 ND 39 / 0.002 Lus10040056 [exp] 127 / 1e-37 AT5G28823 41 / 2e-04 unknown protein Lus10035002 [exp] 121 / 2e-35 AT2G01050 39 / 0.001 zinc ion binding;nucleic acid binding (.1) Lus10026443 [exp] 119 / 4e-34 ND / Lus10004792 [exp] 120 / 2e-33 ND / Lus10001304 [exp] 110 / 2e-28 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10008146 [exp] 104 / 7e-28 ND / Lus10035493 [exp] 108 / 2e-27 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10001095 [exp] 96 / 2e-25 ND 38 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010518 pacid=23156656 polypeptide=Lus10010518 locus=Lus10010518.g ID=Lus10010518.BGIv1.0 annot-version=v1.0 ATGTTTCGTAAATCCATACTTGAGCAAGGTGTCAAGCGCCTGCGTTCAGCTGTGGTGACGCCGTTTGTGAGCACGATTCCTTCTACTCGTATTACTTCTT CAATGATCAATCGGCTGTGGGGATATGAAGGTGAGGTTGTTCTCTCTATGATTTCGGAAGAATTTTTCCTTATTGAGTTTCCATCCGTGAAGTTATGTGA TTGGGTCTTGAGTCGCGCTTGGCATATGTATCATTCTGCCATGATTCTAAGGAAATGTCAAGTTGGTATTGTTCCTCTGGATCTTGAGGTGAAGGAAATC CCTACTTGGATTACACTTCGAAATGTTACTCCTCAATTGTTAACAAATGTTGCGATTGAGTGGATGGTTAGTAGAATTGGTACCCCAATTAATAAGTTTA TAAGAGCTGGTCTTGATATAAAGGTTTGTATTCTTCTGAATCAAGACACTATTTGTCCCTCCTGTCTTCCTGTTTCGATTGAGGGTGAGAGAATCAATAT TCTTATTGAAACACCTCAGGGTCATACCTAA
AA sequence Show only first row Show all	>Lus10010518 pacid=23156656 polypeptide=Lus10010518 locus=Lus10010518.g ID=Lus10010518.BGIv1.0 annot-version=v1.0 MFRKSILEQGVKRLRSAVVTPFVSTIPSTRITSSMINRLWGYEGEVVLSMISEEFFLIEFPSVKLCDWVLSRAWHMYHSAMILRKCQVGIVPLDLEVKEI PTWITLRNVTPQLLTNVAIEWMVSRIGTPINKFIRAGLDIKVCILLNQDTICPSCLPVSIEGERINILIETPQGHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010518 [exp]	0	1
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	3.5	0.7198
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	6.5	0.6653
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	7.9	0.6653
AT3G18570			Oleosin family protein (.1)		Lus10032461 [exp]	7.9	0.6632
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	9.2	0.6653
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	10.2	0.6653
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	11.2	0.6653
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	13.6	0.5872
AT2G32645			Domain of unknown function (DU...		Lus10020591 [exp]	15.4	0.5637
AT5G28823			unknown protein		Lus10040056 [exp]	18.2	0.5634

Compare expression of checked genes

Lus10010518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.