Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 96 / 5e-23 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT4G02810 68 / 4e-13 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT1G03170 65 / 4e-12 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT3G06020 65 / 6e-12 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT5G22090 57 / 7e-09 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT1G54740 49 / 2e-06 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034061 [exp] 435 / 2e-155 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 184 / 9e-57 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 103 / 5e-26 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10021930 [exp] 100 / 8e-26 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 94 / 2e-22 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 73 / 1e-14 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 68 / 5e-13 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 69 / 9e-13 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 64 / 3e-11 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149600 [exp] 120 / 1e-31 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 101 / 8e-25 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 83 / 3e-18 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 81 / 3e-17 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 57 / 5e-09 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 48 / 5e-06 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.004G144000 [exp] 44 / 2e-05 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.009G162800 [exp] 41 / 0.0005 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10010520 pacid=23156671 polypeptide=Lus10010520 locus=Lus10010520.g ID=Lus10010520.BGIv1.0 annot-version=v1.0 ATGGGAACCATAGTTTGCCAAGGCTTGCAGTCGTACCTCGAATCCCAGATCGCCGAGTCCAGAACTCTTCGTCTCAGACTGTCCGCACCAAAGCCCAGCT CAGAATCGCCCGGGTGGGGCTCCATCCAGACCTTAACCGACCCCGCCCACTTCCTTAAACCGGCCCCCATGGTGGTGAAACGCAGCGTCTCGTCCTGCCT CAGCGACAAAAGCCTCCAGCTCTGCACCGAGAATCTCGGCAGCGAAACCGGCGCCGACCAAACCGAGAATCTCGGCAGTGAAACCGGCGCCGACCAACAA CTATTCTTTTCCGATCCTCATCATGACAGCAATTACTACCTCTTCTCCTCCGAACAAAGAATTATCGGGAATTCCGATGAGAAGGCGACGGAATCGCCGG CGGCGGTTAAGAAATCGAGGACGGCGCCGAGGGGGAATGGGTTTCCTCCGCCGCTGACGACGATGAGGGGCCCAGAATTGATAAAAGTGAGGCCCCACAG GGAAGGAGGGAGGCTGGTGATGAAGGCCGTGAAGTCGCAATCTCCACCGTCATGTTTCCAAGCGGAAAGGATCGACAGCCGCCTTCGCCTCCACGTGGTG GTTGGTCATTCGCTGGATACCGCGTTTGACTACTCTGCTTCAATTGTGACAGAATGCAACGATAATGATAATAATAATAATACTAATTACGCGGAAGAGA ATGAAATCCGAGAAGAGGAAGGAGTGGGAAGGAGCCATCATCATCATCATCATCATCATCATCAACATCAACAACATCATCAACATGAGAATGTGAATTA TGTGAGCAGTGATGAGAGTAGTAAAGAAGGACTGGTGTTGAATTGGGAGCCTTTTCGGGTGGCTACGGCTCTTCAAGTTTGA
AA sequence Show only first row Show all	>Lus10010520 pacid=23156671 polypeptide=Lus10010520 locus=Lus10010520.g ID=Lus10010520.BGIv1.0 annot-version=v1.0 MGTIVCQGLQSYLESQIAESRTLRLRLSAPKPSSESPGWGSIQTLTDPAHFLKPAPMVVKRSVSSCLSDKSLQLCTENLGSETGADQTENLGSETGADQQ LFFSDPHHDSNYYLFSSEQRIIGNSDEKATESPAAVKKSRTAPRGNGFPPPLTTMRGPELIKVRPHREGGRLVMKAVKSQSPPSCFQAERIDSRLRLHVV VGHSLDTAFDYSASIVTECNDNDNNNNTNYAEENEIREEEGVGRSHHHHHHHHHQHQQHHQHENVNYVSSDESSKEGLVLNWEPFRVATALQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	0	1
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	2.4	0.9113
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	3.2	0.9004
AT2G32190			unknown protein		Lus10031782 [exp]	4.9	0.8490
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	9.8	0.8714
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	10.9	0.8672
AT1G67790			unknown protein		Lus10034566 [exp]	11.0	0.8763
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	11.2	0.8700
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	12.4	0.8502
					Lus10022875 [exp]	13.7	0.8322
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	15.1	0.8681

Compare expression of checked genes

Lus10010520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.