Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 590 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT4G31750 90 / 1e-19 WIN2 HOPW1-1-interacting 2 (.1) AT3G51470 87 / 4e-18 Protein phosphatase 2C family protein (.1) AT5G10740 84 / 3e-17 Protein phosphatase 2C family protein (.1) AT5G24940 79 / 2e-15 Protein phosphatase 2C family protein (.1) AT5G53140 76 / 2e-14 Protein phosphatase 2C family protein (.1) AT1G07160 73 / 1e-13 Protein phosphatase 2C family protein (.1) AT2G40860 74 / 2e-13 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT1G43900 72 / 2e-13 Protein phosphatase 2C family protein (.1) AT1G09160 71 / 1e-12 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034062 [exp] 949 / 0 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10041216 [exp] 773 / 0 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 768 / 0 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10020104 [exp] 88 / 9e-19 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 87 / 1e-18 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 82 / 3e-17 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 82 / 3e-17 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10013213 [exp] 78 / 3e-15 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 76 / 2e-14 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149700 [exp] 716 / 0 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.010G091500 [exp] 690 / 0 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.005G102500 [exp] 93 / 3e-20 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 87 / 2e-18 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 86 / 3e-18 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.013G099400 [exp] 87 / 4e-18 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 82 / 1e-16 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.007G058700 [exp] 82 / 1e-16 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 82 / 1e-16 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 81 / 4e-16 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10010521 pacid=23156651 polypeptide=Lus10010521 locus=Lus10010521.g ID=Lus10010521.BGIv1.0 annot-version=v1.0 ATGATGCCTCAGAGCATTGGCGGTATCCTTCTCCTTATGCTACTTCTGATCCTCCTCCTCATCCTCCTCGTCGCCTGTAAGCCATGGCGCCTCTGTCTCT CTTCTTCCTCTCGTTCTTGTTCTTCTTCTCTTAAGGTTACTGGTGAGCTAGAGAGGCCTCTTATTTCAGATGATGTGGATGTCCATGCTGACAGCAATGA AGCTTCAAGAATTTATGATATTGAAGACGCTTGTCGTCAACATGATATGCTTTTGCATTCACCCCGCACCAAGGAATTTGTCCACAAACCGAAGCTTCCA TCACCATCTTCTGCCCTTCCCCAAGCTGCTGATAGCTTGGTTGTAGAGGTGGTTCCAGATCATGTAGAAGATATTCAACTTGGGCAAACCCTCAAGTTTT CTCCGTTCGCTGGACGTTTGCCTGAGGTGCAGAAACACTTTAGACAAGAGAATCAAATTCCAAATACCCAGCCTGGTTCACAAAATGATAAGTTATCTGG ATCCACAATCAAGACTAATCATGATCAAAGAAGCTGCCTCTCCCTTGAGGTCATCTCTGGTCCTTCTAAGGGACTATGCTGCTCTGTGCAGTCAACAAGT GCTTCACGGCTTCCTGTGACCCTTGGAAGAGTTTCTGGCGACTTACTGTTTAAAGACTCAGAGGTGTCAGGGAAACATGCTATGGTCAACTGGAATGCCG AGAAAAAGAAATGGGAGGTGGTTGACATGGGTAGCCTCAATGGAACACTTCTTAATTCTCGGCCAATTAACCACCCTGATTCTGGAAGTAGGCAATGGAG TAAGCCAATTGAGCTTTCAAGTGGTGATATAATAACTCTTGGCACAACATCAAATGTACAGGTCAATCTAACTTCTATGTCGGCAAGCTGGATGCCCTTT AGGGTGGGGATGGCTTCCGATCCTATGGCTTTGCGCCGTGGAGGAAAGAAGCTACCTATGGAAGATGTGTGTTATTATTCCTGGCCCCTGCCAGGCATTC CCAAGTTTGGTGTTTTTGGTATTTGTGACGGACATGGTGGAGTAGCTGCTGCAAAATCTGCCAGCAAGATGTTGCCGGAGAAATTAGTCAGTATCTTAGC AAACTCAGAAGTAAGGGAGAAGGTTATATCACAAGGCGAAGCTTCTAATGTTCTTAAAATGGCATTTTCTCAGACAGAAGCTTCCATGAATAACTATTAT GAGGGTTGTACAGCAACAGTGCTTCTGGTTTGGACTAATGATGGCGAAGAATATTTTGTGCAATGTGCAAATGTTGGGGATTCCTTCTGTGTGATGCACG TCAATGGGAAGCAGATCAAGATGACAGAAGATCACAGAGTAACTAGCAACTCCGAAAGAGTTAGATTCAGTGGAATCGGAAAGCCATTGAAAGCTGGGGA GACTCGTCTTTTTGGTCTGAATCTTGCTAGAATGCTTGGAGACAAATTCCCAAAAGAGCAAGATCCTCGTTTCAGTTCAGAGCCTTACATAAGTGAAGTC GTGCGCATAGATCAAGCAAGCGGCTGCTATGCACTATTAGCCAGCGACGGGTTTTGGGATGTTGTCAGTGTTAAAAAGGCTGCTCAGCTGGTCCAGCAGG AAAATGAGAAGCAGCATGCAGCTTGGGAGAATCCAGCAGAGAAGGTTGCTAATGCGTTGTTGAGTGAAGCTAAAGACCAGCGTACAAAGGATAATACCTC CATACTTTTCTTGGATTTTAACACCAAATTTAGATGGCCGCCATGTAAAGAGTAA
AA sequence Show only first row Show all	>Lus10010521 pacid=23156651 polypeptide=Lus10010521 locus=Lus10010521.g ID=Lus10010521.BGIv1.0 annot-version=v1.0 MMPQSIGGILLLMLLLILLLILLVACKPWRLCLSSSSRSCSSSLKVTGELERPLISDDVDVHADSNEASRIYDIEDACRQHDMLLHSPRTKEFVHKPKLP SPSSALPQAADSLVVEVVPDHVEDIQLGQTLKFSPFAGRLPEVQKHFRQENQIPNTQPGSQNDKLSGSTIKTNHDQRSCLSLEVISGPSKGLCCSVQSTS ASRLPVTLGRVSGDLLFKDSEVSGKHAMVNWNAEKKKWEVVDMGSLNGTLLNSRPINHPDSGSRQWSKPIELSSGDIITLGTTSNVQVNLTSMSASWMPF RVGMASDPMALRRGGKKLPMEDVCYYSWPLPGIPKFGVFGICDGHGGVAAAKSASKMLPEKLVSILANSEVREKVISQGEASNVLKMAFSQTEASMNNYY EGCTATVLLVWTNDGEEYFVQCANVGDSFCVMHVNGKQIKMTEDHRVTSNSERVRFSGIGKPLKAGETRLFGLNLARMLGDKFPKEQDPRFSSEPYISEV VRIDQASGCYALLASDGFWDVVSVKKAAQLVQQENEKQHAAWENPAEKVANALLSEAKDQRTKDNTSILFLDFNTKFRWPPCKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	0	1
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	1.0	0.9033
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	3.2	0.8860
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	4.1	0.8294
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	5.3	0.8331
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	5.3	0.8516
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	7.1	0.8628
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	8.7	0.8812
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	10.2	0.8484
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	12.0	0.8520
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	14.7	0.8221

Compare expression of checked genes

Lus10010521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.