Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06010 1333 / 0 ATCHR12 Homeotic gene regulator (.1) AT5G19310 1262 / 0 Homeotic gene regulator (.1) AT2G28290 563 / 1e-172 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G18620 475 / 5e-150 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 474 / 8e-150 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G46020 471 / 6e-142 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G66750 417 / 2e-131 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G13370 417 / 3e-124 CHR5 chromatin remodeling 5 (.1) AT2G25170 380 / 2e-112 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 367 / 8e-112 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034064 [exp] 1962 / 0 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 549 / 6e-168 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033967 [exp] 469 / 3e-142 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10036371 [exp] 467 / 4e-140 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10041735 [exp] 425 / 7e-134 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10009711 [exp] 412 / 5e-123 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 413 / 2e-122 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10041019 [exp] 378 / 2e-111 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 377 / 4e-111 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149900 [exp] 1436 / 0 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 1418 / 0 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G019150 [exp] 584 / 5e-180 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 577 / 2e-177 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G021400 [exp] 476 / 2e-150 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 473 / 4e-149 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.014G086500 [exp] 466 / 4e-140 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.002G160900 [exp] 465 / 1e-139 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.019G129900 [exp] 419 / 2e-132 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 415 / 1e-130 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010522 pacid=23156660 polypeptide=Lus10010522 locus=Lus10010522.g ID=Lus10010522.BGIv1.0 annot-version=v1.0 ATGCAGAATGTTACAATTAATCAGCAGCTTGAAGCGGGGACAAGAGTGACAGTGGCTATGGGAACTGATCGGAATTTGGATTCAGGTACACTACGTCCTG TTGTTTCATTGTCGAAGCCCAGGGAGGAAGCTGGAATGTACTGGGGTTATCGAGAGGGTCCTGAGATATCAGTGAAAGGTGATTTGATGGCTGAATTTGA GGATGCACTATCAAACCAGAGATCCAAATTTATGTCTGGCTCTATGCTAGCGGACTCAAGGATGAAACGATATCAAAGCACTGTCGAACACCGAGTGAAT GAACTTGAAGAATTGCCTTCAACTAGAGGGGAGGATGTGCAAGCAAAGTGGTTACTTGAGCTTTATGGACTAAAGTTGGAAGAGCTTCAAAGGAAAGTTC GATCTGAAGTCAATTCAGAATACTTGCTTCGTTTGAGTTGTGCCTGTCCAGACAGGCAGTTGTATGACTGGAGTATGATGCGACTGCGGCGTCCTATGTA TGGTGTAGGAGATGCTTTTGCTACGGAAGCTGATGACCAGTTCAGAAAGAAACGTGATGCTGAGAGGTTGTCAAGGTTAGAGGAGCAAGAAAGGAACAAT TTCGAGACTAGAAAAAGGAAATTTTTCGCAGAATGTGCAGAAGTACTTAATGCACTGCGGGAGTTTCAGTTGCAAAATCAGGCTTCTCTTAAACGTCGAA AGCAAAGAAATGACTTTATCCAGGGGTGGCATACAAAACAAAGGCAACGTGCTACTCGGGCTGAAAAATTAAGGTTCCTAGCCCTAAAGGCTGATGACCA GGAAGCCTACATGAGATTAGTGAAGGAAAGCAAAAATGAACGATTGACAATGCTTCTTTCAGAAACAAATAAACTCCTGGTCAGTCTGGGAGCCGCCGTG CAGCGCCAGAAACATAATGCCGATGGCATTGAGCCCTTACCAGTTGAGGTTGATGGTGATTCTGATAATGGTGAAGATACTGCTGATTTGCTAGAAGGTC AGCGACAGTACAACTCGGCCATTCATTCAATTGAGGAGAAGGTGATCGAGCAGCCCTCAATACTGAAAGGTGGACAGTTAAGACCTTACCAAGTAGAGGG CCTTCAGTGGATGGTCTCTTTATTTAACAACAATTTAAACGGGATATTGGCTGATGAGATGGGATTGGGGAAGACGATTCAAACTATTTCATTGATTGCA TATCTCAAGGAGAAGAAGGGTATCGCTGGACCGCACATTATAATGGCCCCTAAGGCTGTCCTGCCAAATTGGATCAATGAATTCGCAACTTGGCTTCCTA AGGACGCGATCAAGGCGGTTCATTATGATGGCCGTGCTGACCAGAGAAAAGATTTGAGAGACCATTTATCCAAAGAGGGCTTTGACGTTTTAATCACACA TTATGACCTACTTATGAAGGACAAAGCATTTCTGAAGAAAATCAACTGGGTTTATCTTATCGTTGACGAAGGACACCGATTGAAAAATCACGAGTGTGCT CTTTCACGAACTCTTGAATCAGGATTTCAGTTTCAGCGCAGACTTCTATTAACTGGAACCCCAATACAGAATAGTTTACAGGAGTTGTGGTCGCTCCTCA ACTTTCTCCTCCCTAGTATTTTCAACTCAGTAGCGAAATTTGAAGAATGGTTTAACTTGCCCTTTGCCGATCGAGGTGACATTAGTCTTACTGAGGAGGA ACAGTTGCTGGTTATTCGCCGTCTACATCATGTTATAAGACCCTTCATATTGAGGAGAAAGAAGGATGAGGTTGAGAAACTCCTTCCTTCAAAGTCGCAG GTTATTTTAAAGTGTGATATGTCATCATGGCAAAAGGTTTATTATCAACAAATTACAGAGATGGGCAGAGTTGGGCTGCAGAATGGATCTGGGAAGTCGA AAAGTTTACAGAACCTAACAATGCAGCTGAGGAAGTGCTGTAATCATCCATACCTTTTCGTAGGAGATGACTATAACATGAATCAGGTGGATGAAATCAC CAGGGCATCAGGGAAGTTTGAGTTGCTGGACCGACTACTTCCAAAGTTACGTGCCAGGGGGCACAGAGTTCTGCTTTTCTCGCAGATGACGAAACTGATG AACATACTTGAGATCTATTTGAGGCTCCACGATTACAAGTATCTTAGACTCGATGGCACAACTAAAACGGAGGAAAGAGGCATTAAACTGAAGCAGTTCA ATGCTCCAGACTCTCCATACTTCATGTTTCTTCTGAGCACACGAGCAGGAGGGCTTGGATTGAATCTGCAGACTGCAGATACAGTGATCATGTTCGATAG CGATTGGAATCCTCAAATGGATCAACAAGCCGAGGATCGTGCACATCGTATAGGGCAAAAGAATGAAGTCCGGGTGTTTGTGCTTGTTAGCGTTGGCTCC ATTGAAGAGGTGATCTTGGAGCGTGCAAAGCAGAAGATGGGCATTGATGCAAAGGTCATTCAGGCCGGACTTTTTAACACCACATCCACTGCTCAGGACA GAAGGGAGTTGCTGGAAGAAATTATGCGCAAAGGATCGAGTTCACTGGGAACAGATGTGCCAAGTGAGAAGGAAATCAACAGGCTGGCAGCCCGATCACC GGAAGAACTCCGGTATTTCGAGAAGCTGGATGAGGAGAGAAGGAGGAAGGAAAATTACAGGTCTCGTTTGATGGAAGAACGTGAGGTTCCTGAGTGGGCA TATCAGAACATATCCAAGGATGATAAGCCCAGCAAAGGTTTTGACCAGACTGCAGTGCTGGGAAAGCGCAAGAGAAAAGACGTTAGTTATGCCGATACAT TGACCGATCGGCAGTTCTCCAAGGCAGTGGAAAATGGAGACTACGTATCGACATTATCAGGTAGAAGAATTGATACGCCTCCTCATCGAGCTGCTGCCAT GCCTAAGTTCGCCGAAGGTAATCAACTTGTCAGCAATGGTGCTTCGCAGGCAGCAGAGTCTATTAATGAAACGATGAGTGAAGGAACCAGTGAAGAGATG TACATGTCAGCACCGAGAAAAATGAATCCTGCTGTTGATTCTGGTATGGATAAGTATGAGTTGCAGAGCAGCAGCATAATGTGGAGCGGGCAAATGCCGA CTTGGAATCCTCATAAGAAGAAGAGATCAAACTATGCGGCTCCAAGCTCATCATCCGATTCCAGAGGACAAAATTCCGGTGGAAGAAGTAACAGATGGAA CTGA
AA sequence Show only first row Show all	>Lus10010522 pacid=23156660 polypeptide=Lus10010522 locus=Lus10010522.g ID=Lus10010522.BGIv1.0 annot-version=v1.0 MQNVTINQQLEAGTRVTVAMGTDRNLDSGTLRPVVSLSKPREEAGMYWGYREGPEISVKGDLMAEFEDALSNQRSKFMSGSMLADSRMKRYQSTVEHRVN ELEELPSTRGEDVQAKWLLELYGLKLEELQRKVRSEVNSEYLLRLSCACPDRQLYDWSMMRLRRPMYGVGDAFATEADDQFRKKRDAERLSRLEEQERNN FETRKRKFFAECAEVLNALREFQLQNQASLKRRKQRNDFIQGWHTKQRQRATRAEKLRFLALKADDQEAYMRLVKESKNERLTMLLSETNKLLVSLGAAV QRQKHNADGIEPLPVEVDGDSDNGEDTADLLEGQRQYNSAIHSIEEKVIEQPSILKGGQLRPYQVEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIA YLKEKKGIAGPHIIMAPKAVLPNWINEFATWLPKDAIKAVHYDGRADQRKDLRDHLSKEGFDVLITHYDLLMKDKAFLKKINWVYLIVDEGHRLKNHECA LSRTLESGFQFQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVAKFEEWFNLPFADRGDISLTEEEQLLVIRRLHHVIRPFILRRKKDEVEKLLPSKSQ VILKCDMSSWQKVYYQQITEMGRVGLQNGSGKSKSLQNLTMQLRKCCNHPYLFVGDDYNMNQVDEITRASGKFELLDRLLPKLRARGHRVLLFSQMTKLM NILEIYLRLHDYKYLRLDGTTKTEERGIKLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIMFDSDWNPQMDQQAEDRAHRIGQKNEVRVFVLVSVGS IEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRRELLEEIMRKGSSSLGTDVPSEKEINRLAARSPEELRYFEKLDEERRRKENYRSRLMEEREVPEWA YQNISKDDKPSKGFDQTAVLGKRKRKDVSYADTLTDRQFSKAVENGDYVSTLSGRRIDTPPHRAAAMPKFAEGNQLVSNGASQAAESINETMSEGTSEEM YMSAPRKMNPAVDSGMDKYELQSSSIMWSGQMPTWNPHKKKRSNYAAPSSSSDSRGQNSGGRSNRWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	1.0	0.9550
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	5.0	0.9065
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	6.9	0.9078
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	7.6	0.9107
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	8.5	0.9074
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	14.9	0.8961
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	16.1	0.9043
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	16.6	0.9047
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030864 [exp]	16.9	0.8936
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	20.1	0.8969

Compare expression of checked genes

Lus10010522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.