Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19320 662 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G63130 657 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT3G06000 165 / 1e-47 RNI-like superfamily protein (.1) AT1G10510 116 / 2e-27 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 69 / 2e-13 WPP2 WPP domain protein 2 (.1) AT5G43070 67 / 6e-13 WPP1 WPP domain protein 1 (.1) AT5G27940 49 / 1e-06 WPP3 WPP domain protein 3 (.1) AT2G20210 44 / 0.0003 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034066 [exp] 1003 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10014670 [exp] 654 / 0 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10006930 [exp] 645 / 0 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10030658 [exp] 109 / 6e-25 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030829 [exp] 108 / 1e-24 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10010235 [exp] 77 / 2e-16 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10009747 [exp] 76 / 5e-16 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10042643 [exp] 57 / 2e-09 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10006825 [exp] 45 / 0.0002 AT1G47890 377 / 6e-114 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G091100 [exp] 757 / 0 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.002G052900 [exp] 658 / 0 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 657 / 0 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.008G193700 [exp] 113 / 3e-26 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.014G021900 [exp] 78 / 1e-16 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 72 / 8e-15 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.005G011600 [exp] 48 / 2e-05 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.010G183400 [exp] 46 / 6e-05 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G061700 [exp] 45 / 0.0001 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.014G194800 [exp] 43 / 0.0007 AT2G20210 527 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010523 pacid=23156668 polypeptide=Lus10010523 locus=Lus10010523.g ID=Lus10010523.BGIv1.0 annot-version=v1.0 ATGGATTCAAGTGCAGCAACTCCGAGCCCAGAACGCCGCCCATTTTCAATCAAGCTATGGCCACCGAGCGATAATACAAGGCAGATGCTTCTAGTTCGCG TCGTTGACAATCTTACTTCCAAGTCCATATTTGCTGAGAAGTATGGGAGTCTGAGCAAGGAAGAAGCTGAGGAGAATGCGAAAAGAATTGAGAATAATGC TTTTACTACTGCGGACCAACACTATGAAAAGGAACCAGATGGTGATGGAGGTGCTGCTGTGCAGATATATGCCAAAGAATGTAGTAAGCTAATCTTGGAG GTCCTGAAAAGAGGTCCTGTACCAAAAGAGGAGAGAGAAGTTCTGCCATCTGTTGCAGAAGTCACTACATCTCCTGAGACTTTCTTTGATATATCTAAGG GCCCAAGATCCTTCATAGATGCAAATGAGACAGAAAAGATTCTAATGCCGTTGAAGGAACCTGGAAATACTTATTCGAAGATATGCTTTAGCAACAGGAG CTTTGGCTTAGAAGCTGCTCAGGCTGCTGGACCTGTTTTAGCATCCATCAAGGATCAGTTGAAAGAGGTTGATTTGTCTGATTTTATTGCTGGAAGGCCG GAAGACGAAGCTCTTGATGTAATGCGTATTTTCTCTGCTGCATTGGAAGGTAGCATGCTGGAGTCCTTGAACCTTTCGGACAATGCCTTGGGTGAAAAGG GTGTGAGGGCTTTTGAGGCACTTCTGAAATCACAGAGATGCTTAGAAGAGCTATATTTGATGAATGATGGTATCTCAGAAGAAGCTGCACGAGCAGTTTG TGAATTGATTCCATCCACTGAGAGTCTCAGGGTCCTTCGTTTCCACAATAATATGACAGGTGATGAAGGCGCACTTGCAATCGCTGAGGTCCTGAAGAAA TGTCCAGTGCTTGAAGACTTCCAATGCTCTTCGACAAGGGTAGGCTCCGAAGGCGGAGTTGCTTTGTGCAAAGCACTGGAGTCTTGCCCTCGGTTGAAGA CATTAGACTTAAGAGACAATATGTTTGGGGCTGAAGCTGCAGTTGCTCTGGCAAAGGCATTCCCCAAGCTTCCTAGTTTGACCGAGGTATATTTGAGCTA TCTGAATTTAGAAGATGAAGGAGCTATTGCGATAGCAAATGCCCTTAAGGAGTCGGCTCCTTCGCTCGAAGTCTTGGATATGATGGGGAATGACATCACG ATTGAAGCTGCTCCTAGTATTGCTGCATGTATAGCATCGAAGCAAAACCTGACCAAGCTGAACTTGGATGAAAATGAACTCAAGGATGAAGGAGCTATCC AGATTGGTAAGGCTTTGGAAGCAGGGCATCCTCGGTTGAAGCAAGTTGATATGAACACCAATTGCATTGGTAGAGCCGGTGCTCGTGTCTTGGCTCAGAT TGTCCTTGAGAAACCAGACTTCAACTTGCTGAATATCAACGCCAATTTCATCTCCGAGGAAGGCATTGATGAGGTGCAGGAGCTTTTTGCAAAATGCTCT CAGAAGCTTGGGCCTCTTGATGATAATGATCCCGAAGGAGTAGGTGATGGGGAAGAATCTGAAGAGCATGATGAGGAAGATGATGCTGAATTAGAATCGA AGATGAAGAATCTAGATGTCACCGAAGAGGATTAG
AA sequence Show only first row Show all	>Lus10010523 pacid=23156668 polypeptide=Lus10010523 locus=Lus10010523.g ID=Lus10010523.BGIv1.0 annot-version=v1.0 MDSSAATPSPERRPFSIKLWPPSDNTRQMLLVRVVDNLTSKSIFAEKYGSLSKEEAEENAKRIENNAFTTADQHYEKEPDGDGGAAVQIYAKECSKLILE VLKRGPVPKEEREVLPSVAEVTTSPETFFDISKGPRSFIDANETEKILMPLKEPGNTYSKICFSNRSFGLEAAQAAGPVLASIKDQLKEVDLSDFIAGRP EDEALDVMRIFSAALEGSMLESLNLSDNALGEKGVRAFEALLKSQRCLEELYLMNDGISEEAARAVCELIPSTESLRVLRFHNNMTGDEGALAIAEVLKK CPVLEDFQCSSTRVGSEGGVALCKALESCPRLKTLDLRDNMFGAEAAVALAKAFPKLPSLTEVYLSYLNLEDEGAIAIANALKESAPSLEVLDMMGNDIT IEAAPSIAACIASKQNLTKLNLDENELKDEGAIQIGKALEAGHPRLKQVDMNTNCIGRAGARVLAQIVLEKPDFNLLNINANFISEEGIDEVQELFAKCS QKLGPLDDNDPEGVGDGEESEEHDEEDDAELESKMKNLDVTEED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10010523 [exp]	0	1
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	1.0	0.9428
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	2.0	0.9410
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	9.5	0.9271
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	12.7	0.9376
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	13.6	0.9355
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006457 [exp]	13.9	0.8901
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	17.6	0.9344
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	18.0	0.9052
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	19.7	0.9294
AT3G20490			unknown protein		Lus10019628 [exp]	21.2	0.9277

Compare expression of checked genes

Lus10010523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.