Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 109 / 3e-27 GTE7 global transcription factor group E7 (.1) AT5G10550 103 / 5e-25 GTE2 global transcription factor group E2 (.1) AT1G73150 93 / 1e-21 GTE3 global transcription factor group E3 (.1) AT1G17790 85 / 6e-19 DNA-binding bromodomain-containing protein (.1) AT5G14270 76 / 1e-15 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G06230 72 / 3e-14 GTE4 global transcription factor group E4 (.1.2.3) AT5G63320 66 / 2e-12 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 62 / 4e-11 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT3G27260 60 / 3e-10 GTE8 global transcription factor group E8 (.1.2) AT2G34900 57 / 1e-09 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007096 [exp] 378 / 1e-129 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 374 / 5e-128 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 321 / 1e-110 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10039630 [exp] 96 / 3e-22 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10032076 [exp] 82 / 1e-17 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 79 / 2e-16 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10017661 [exp] 76 / 1e-15 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 76 / 1e-15 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 76 / 1e-15 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 234 / 8e-74 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 227 / 3e-71 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.011G096400 [exp] 93 / 9e-22 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 88 / 7e-20 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 82 / 8e-18 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.013G118900 [exp] 78 / 3e-16 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 77 / 5e-16 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.019G090700 [exp] 76 / 8e-16 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 75 / 2e-15 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.010G219200 [exp] 58 / 1e-09 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10010524 pacid=23156633 polypeptide=Lus10010524 locus=Lus10010524.g ID=Lus10010524.BGIv1.0 annot-version=v1.0 ATGGCTTCAGCTGTGCTAGCTAATTTGAGCCAACCGAGCTGGATGCAGGCACAGCCGGCCGGTGGTGCCAAGCTAATGGGCAAATACCCCTTCTCCAACT CCAACGCTAGCAACCCTAACCCTCAATTCTCTAAGAAACAGCACTTTCAGGCGTTGCCTTTCGCCGATGTAGATGAATCTCCGGCGTTCACGGCGGCTGA CGACGCGTCATCAATTAATCGGAGACCTAACGATTTCAACACTGGGCGATACGTCACCTTCAATGTCGCATCTTATTCAAAGAAGGAGCTTGTGGAGCTG AAGAGTCGATTGGTTGTTGAGCTTGAGCAGATCCGGCAATTGAAGAGCCGCATCAATTCCCCCTCCGGCTTCCAGATCAGATCCGACTCAAATTTTCATA ACAAGAAACCAATTGGTGCGCCGAGCAGCAACAAGAAGATACTGGGAAACAAGCGGCCGTTCCCTGCTACGAATTCGAGTTTCGGGGTTCAGGAATTGAA GAGATCACACCACCAAGATACCTCGCAATTGATGAAGAAGTGCGGCCAGATCTTGTCCAGATTGATGAAGCACAAGTACGGGCACATCTTCAACGTTCCG GTAGACGTCGTGGGATTGCAGCTTCACGATTATAATGACATAATTAAACAGCCGATGGATTTGGGAACCGTGAGGAGATCCACGAAGAAGAGGAAGAACT CGTACAAGAAGTAG
AA sequence Show only first row Show all	>Lus10010524 pacid=23156633 polypeptide=Lus10010524 locus=Lus10010524.g ID=Lus10010524.BGIv1.0 annot-version=v1.0 MASAVLANLSQPSWMQAQPAGGAKLMGKYPFSNSNASNPNPQFSKKQHFQALPFADVDESPAFTAADDASSINRRPNDFNTGRYVTFNVASYSKKELVEL KSRLVVELEQIRQLKSRINSPSGFQIRSDSNFHNKKPIGAPSSNKKILGNKRPFPATNSSFGVQELKRSHHQDTSQLMKKCGQILSRLMKHKYGHIFNVP VDVVGLQLHDYNDIIKQPMDLGTVRRSTKKRKNSYKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	0	1
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	2.0	0.8487
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10035126 [exp]	2.4	0.8168
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	4.2	0.8478
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	4.5	0.8296
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	7.1	0.8284
AT1G47380			Protein phosphatase 2C family ...		Lus10021737 [exp]	7.9	0.8026
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	11.4	0.7973
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	16.4	0.7750
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	17.9	0.8444
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	19.6	0.7996

Compare expression of checked genes

Lus10010524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.