Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 160 / 3e-45 GTE7 global transcription factor group E7 (.1) AT5G10550 144 / 2e-39 GTE2 global transcription factor group E2 (.1) AT1G06230 86 / 1e-18 GTE4 global transcription factor group E4 (.1.2.3) AT1G17790 82 / 8e-18 DNA-binding bromodomain-containing protein (.1) AT1G73150 82 / 1e-17 GTE3 global transcription factor group E3 (.1) AT5G63320 47 / 1e-05 NPX1 nuclear protein X1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034067 [exp] 328 / 1e-109 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10007096 [exp] 326 / 4e-109 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020471 [exp] 119 / 4e-34 AT5G10550 49 / 8e-08 global transcription factor group E2 (.1) Lus10017661 [exp] 100 / 2e-23 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 99 / 2e-23 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 99 / 2e-23 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 97 / 1e-22 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10029774 [exp] 47 / 1e-05 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10042803 [exp] 47 / 1e-05 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080000 [exp] 241 / 2e-76 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.001G285700 [exp] 239 / 9e-76 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.013G118900 [exp] 105 / 1e-25 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 100 / 5e-24 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 91 / 5e-21 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 91 / 2e-20 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.012G094300 [exp] 67 / 2e-12 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.015G091800 [exp] 66 / 4e-12 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.008G043000 [exp] 53 / 5e-08 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 52 / 1e-07 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010525 pacid=23156666 polypeptide=Lus10010525 locus=Lus10010525.g ID=Lus10010525.BGIv1.0 annot-version=v1.0 ATGATTGAGGCTGAAAGGGTACCGAAAGAGCAAGGGGCAGTGATGCAAGTTATGGAGAAATACTCGGAGCAAATTGTTAACTCGATTCCGCCACCTACTA CTTCTGCATCGAGTCAAAACCCTAATCCTCAATCAACAACATCTGAATTGCCTGTTAGGACGCCATCACCGAGGCGAGCTCCACCAGTGAAGCCTTTGAA GCTTCCGAAGCCAAAGGCGAAGGATCCTAATAAGAGGGAGATGAGTCTGGAAGAGAAGCATAAATTAGGAGTAGGTCTACAGAGCATGCCTCCTGAGAAG ATGGAGCAGGTGGTTCAAATAATAAGGAAGAGGAATGGGCATTTGAGGCAGGACGGGGATGAGATTGAGCTTGATATTGAAGCAGTCGATACAGAGACCC TATGGGAACTTGATCGATTTGTCACGAATTACAAAAAAATGGAAAGCAAGCTTAGGCGTCAAGCACTGATTCTCCCTAACATTGGGGGAACTGCTACGAG TGAAGACAACAAGGATGTCCCTTCTAGTGACAGAATTGATGTTTTAACCAAGTCAAAGAAGCCGAAGAAAGGTGATGCTGGTGAAGAAGATGTGGACATT GGCGATGAAATGCCGATGAGCAGCTTTCCGCCAGTGGAGATTGAGAAGGACAACAACGGTGGTCATGCCAGTAGCAGTTCTAGCAGCTCTAGTAGTTCCA GCGATGATTCTTCTTCATCCAGTGATTCTGACTCAGGAAGCTCTTCTGGGAGTGATTCAGAGGATGCTCATTCGTAG
AA sequence Show only first row Show all	>Lus10010525 pacid=23156666 polypeptide=Lus10010525 locus=Lus10010525.g ID=Lus10010525.BGIv1.0 annot-version=v1.0 MIEAERVPKEQGAVMQVMEKYSEQIVNSIPPPTTSASSQNPNPQSTTSELPVRTPSPRRAPPVKPLKLPKPKAKDPNKREMSLEEKHKLGVGLQSMPPEK MEQVVQIIRKRNGHLRQDGDEIELDIEAVDTETLWELDRFVTNYKKMESKLRRQALILPNIGGTATSEDNKDVPSSDRIDVLTKSKKPKKGDAGEEDVDI GDEMPMSSFPPVEIEKDNNGGHASSSSSSSSSSSDDSSSSSDSDSGSSSGSDSEDAHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	0	1
AT5G09310			unknown protein		Lus10041297 [exp]	1.4	0.7621
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	2.0	0.7834
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	4.5	0.7462
					Lus10001731 [exp]	16.6	0.7288
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	21.2	0.6610
					Lus10039510 [exp]	23.3	0.6258
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029771 [exp]	23.7	0.7227
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10014491 [exp]	23.8	0.6230
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	28.6	0.7464
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	30.2	0.6529

Compare expression of checked genes

Lus10010525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.