Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05990 378 / 3e-128 Leucine-rich repeat (LRR) family protein (.1) AT3G19230 273 / 2e-87 Leucine-rich repeat (LRR) family protein (.1) AT1G67720 135 / 1e-34 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 129 / 1e-32 Leucine-rich repeat protein kinase family protein (.1) AT1G51830 124 / 7e-31 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 124 / 1e-30 Leucine-rich repeat protein kinase family protein (.1) AT1G28340 120 / 7e-30 AtRLP4 receptor like protein 4 (.1) AT1G49100 120 / 1e-29 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 118 / 6e-29 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G51810 115 / 6e-28 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002456 [exp] 638 / 0 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 295 / 6e-96 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 292 / 9e-95 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10036935 [exp] 132 / 2e-33 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 130 / 6e-33 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015417 [exp] 122 / 4e-30 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 120 / 2e-29 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10025849 [exp] 119 / 4e-29 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019907 [exp] 118 / 1e-28 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150200 [exp] 408 / 4e-140 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 400 / 6e-137 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 295 / 6e-96 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G052800 [exp] 133 / 6e-34 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G132100 [exp] 130 / 4e-33 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 129 / 1e-32 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 128 / 4e-32 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.004G047300 [exp] 120 / 1e-29 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.011G056800 [exp] 117 / 1e-28 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.005G043700 [exp] 114 / 1e-27 AT3G46280 216 / 3e-63 protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010528 pacid=23156702 polypeptide=Lus10010528 locus=Lus10010528.g ID=Lus10010528.BGIv1.0 annot-version=v1.0 ATGGTCCGGAGCACCTATTTCTACGGGTGGGTCAACGGAAGGGATGAGCCGCCGCCGATCTTCGACCAGATCGTGGACGGGACTCTATGGAGCGTGGTCA ACACGACTGCCGATTTCGCCAACGGCATGTCCAACTCCTACGAAGGGGTTTTCTTGTTGAAAATCCTTAGATATCCGGATGATCCTTATGATCGTATTTG GGAGCCATTCGGAGGCAAGGATACCAACCCTTCGAGAAACAGAAACGTTTCTATTTCGGGCATATGGAATCTCCCACCTTCCAAGGTGTTCGAGACAGAT ATATCCGCAGTAGCAGGACAATCAAGGCAGGCGTTGGAGCTCTCTTGGCCTCCAGCTCCACTTCCAATTCCCCACCAGAATTACTCGATTGCTATGTACT TCGCCGATGATCGATCATCATCGCTTGAAGATCCTAGGGTGCTTGATGTCGCCATAAATGGGGTGACGTATTTCAAGAACTTGAGTCTGACACAAATGGG CTCTCTTGTCTTTGCTAAGCTGTGGCCACTTGGTGGTCTCACCAATATAACGTTGACATCGGCTGCTGGCTCAGCCACTGGTCCATTGATCAATGCAGGT GAAGTGTTCAGATTGATGCCTGTTGGTAGAAGAACACATACCGGAGACATAATAGCCCTGGAGGAATTGAGAAGAAGTTTCAATAACCCACCACAGGATT GGAGCGGTGACCCATGCATGCCCCGTCAGTATCCTTGGACTGGGATTACTTGCTCGGATGGAAGGAGAATCCGTGTAGTTACATTAAATTTGACAAGTAT GGGTCTCTCTGGATTAATATCACCCAGGATTGCTAAGTTGACTGCGCTTACAGACATCTGGCTTGGCAACAACAGATTGTCAGGGTCAATACCCAATCTG AGTTCGTTGAGATTACTTCAAACTCTGCATTTGGAAAACAATACCTTATCTGGAGCGATTCCGTCTTCACTAGGCAACATCAGTGATCTCCGCGAAATAT ACTTACAGAACAATAATCTCGGTGGTGAAATACCTAGAAGCCTCACTGGAAAGCCTGGACTAGACCTCAGGACGAATCCTGGGAATCATTTCTTGTCAGG GCCACCTTCATGA
AA sequence Show only first row Show all	>Lus10010528 pacid=23156702 polypeptide=Lus10010528 locus=Lus10010528.g ID=Lus10010528.BGIv1.0 annot-version=v1.0 MVRSTYFYGWVNGRDEPPPIFDQIVDGTLWSVVNTTADFANGMSNSYEGVFLLKILRYPDDPYDRIWEPFGGKDTNPSRNRNVSISGIWNLPPSKVFETD ISAVAGQSRQALELSWPPAPLPIPHQNYSIAMYFADDRSSSLEDPRVLDVAINGVTYFKNLSLTQMGSLVFAKLWPLGGLTNITLTSAAGSATGPLINAG EVFRLMPVGRRTHTGDIIALEELRRSFNNPPQDWSGDPCMPRQYPWTGITCSDGRRIRVVTLNLTSMGLSGLISPRIAKLTALTDIWLGNNRLSGSIPNL SSLRLLQTLHLENNTLSGAIPSSLGNISDLREIYLQNNNLGGEIPRSLTGKPGLDLRTNPGNHFLSGPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	1.4	0.9439
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	1.7	0.9445
					Lus10036131 [exp]	4.0	0.9390
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	6.3	0.9305
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	6.7	0.9391
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	7.1	0.9366
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	7.5	0.9158
					Lus10005395 [exp]	8.5	0.9294
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	10.2	0.9270
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	12.0	0.9229

Compare expression of checked genes

Lus10010528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.