Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19340 85 / 7e-21 unknown protein AT3G05980 82 / 8e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002455 [exp] 191 / 6e-62 AT3G05980 142 / 4e-41 unknown protein Lus10041215 [exp] 130 / 5e-39 AT5G19340 94 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150300 [exp] 137 / 2e-41 AT3G05980 154 / 3e-46 unknown protein Potri.010G090700 [exp] 121 / 3e-35 AT3G05980 141 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010529 pacid=23156637 polypeptide=Lus10010529 locus=Lus10010529.g ID=Lus10010529.BGIv1.0 annot-version=v1.0 ATGAACTGGTTCCTGGACGACGATCCGTCGCCGCGGCCGCCGAAATGTACGGTGCTGTGGAAGGAACTGCTGAGGCTGAAGAAGCAGAGGCCCAGTGTCT CGTCTCTTTCCCCATCTTCTTCTTCATCGTCGACTTCGTCGTCTTCGAGCTCGCTCGGGGATGCGGCGACCAAGGAGGAATCAGGGAAAGGAGAGAAAGA CAATAAGAAAGGGAACCATCAGCAGCAGGTGAAGAGAGCGAAGAAAGGTCTGGAGAGGACGAGATCTTCGAGCATTAGGATTAGGCCGATGATTAATGTC CCAATTTGTAGCCAGATGAAGAGCAGCAGCAGCCATCATCATCATCACAGTGCATTGCCGCCCTTCTTTCCTCTGAAGAAAGGCAGAGTGTTGGAGAGGT GA
AA sequence Show only first row Show all	>Lus10010529 pacid=23156637 polypeptide=Lus10010529 locus=Lus10010529.g ID=Lus10010529.BGIv1.0 annot-version=v1.0 MNWFLDDDPSPRPPKCTVLWKELLRLKKQRPSVSSLSPSSSSSSTSSSSSSLGDAATKEESGKGEKDNKKGNHQQQVKRAKKGLERTRSSSIRIRPMINV PICSQMKSSSSHHHHHSALPPFFPLKKGRVLER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19340			unknown protein		Lus10010529 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	1.0	0.9083
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	4.0	0.8807
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	5.5	0.8683
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	6.0	0.8584
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	6.6	0.8655
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	7.7	0.8174
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	9.5	0.8317
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	9.9	0.8342
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	10.0	0.8589
AT3G03341			unknown protein		Lus10028523 [exp]	11.5	0.8152

Compare expression of checked genes

Lus10010529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.