Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05970 1058 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 1052 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT4G23850 461 / 6e-154 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 450 / 2e-149 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 448 / 7e-149 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 447 / 1e-148 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 436 / 3e-144 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 368 / 2e-117 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 355 / 2e-112 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 184 / 2e-49 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002454 [exp] 1342 / 0 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 1025 / 0 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 1020 / 0 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 463 / 2e-154 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 454 / 6e-150 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 450 / 2e-149 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 421 / 4e-138 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10001830 [exp] 419 / 5e-138 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002414 [exp] 390 / 3e-126 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090200 [exp] 1127 / 0 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 1057 / 0 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.003G139700 [exp] 461 / 5e-154 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 457 / 2e-152 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 454 / 2e-151 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 406 / 2e-132 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 352 / 2e-111 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 352 / 4e-111 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 350 / 2e-110 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 322 / 3e-101 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10010530 pacid=23156681 polypeptide=Lus10010530 locus=Lus10010530.g ID=Lus10010530.BGIv1.0 annot-version=v1.0 ATGGAGGAACCAAAAGGGCTGATGACGACGGCTGCTCAACGTCGCATGAAGGCCATTCACGATCACCTCACCGCCCCCACCGAATCCTCGCCATCGAACC AGCTCTGTCAGACTCCTACTGCCGGCGAGTTTTTCTCAGAGCAGGGTTACAGTGTAGTGCTTCCTGAGAAACTGCAGACTGGCAAGTGGAATGTGTACAG GTCGGTCCGATCTCCTTTGAAGCTTGTGTCTCGATTCCCTAACAATCCTGAAATCGGCACACTGCATGAAAATTTTGTGCGAGCCGTTGATGTTTACCGT GACTACAAGTATCTTGGGACACGAATTCGAGTTGATGGAACAGTGGGAGACTACAAATGGATGACATTTGGAGAAGCAGGCACGGCAAGAACTTCAATAG GGTCTGGCTTAATGCATTATGGAATAGAGAAGGGTGCTAGTGTTGGATTGTACTTCATCAACAGACCAGAATGGATTATTGTTGATAATGCCTGTTCAGC GTACTCTTATGTATCGGTTCCTTTATATGACACTCTTGGTCCGGATGCTGTCAAGTACATCGTAAATCATGCTACGGTGCAAGCTATATTTTGTGTGCCT CAAACACTGAATTCTTTACTGAGTTTTCTGTCTGAGATTCCATCAGTGCGCGTTATTGTGGTTGTTGGGGGAATTGATGATCAAATACCATCTCTTCAAT CATCAACTGGAGTTCAGGTTGTAACCTATTCGAAACTGCTCAGCCAGGGCCGCAGTAATCTTCATCCGTTTTGCCCACCAAAACCAGAAGATGTAGCTAC GATCTGCTATACAAGTGGCACCACTGGGACACCAAAGGGGGCTGTGTTGAGCCATGAAAATCTGATAGCTAATGTGGCCGGTGCTACATACACCACTAAA TTCTACCCGTCAGATGTTTACATATCATATCTACCCTTGGCACACATTTATGAACGGGCAAATCAGGTCATGACAGTTTATTTTGGAGTAGCTGTTGGAT TTTACCAAGGGGATAACATGAAACTGATGGATGATTTGGCTGCACTTAGACCTACCATATTCTGCAGTGTTCCTCGGCTGTACAATAGAATATATGATGG TATCACCAACACCGTGAAGAGTTCTGGCGGTCTAAGGGAGAGGCTATTCAATGCTGCGTACAATGCAAAAAAGAAGGCTTTACATAGTGGCCAGAAGGCA TCCCCAATGTGGGACAGGTTAGTGTTCAACAAGATTAGAGATAAACTTGGAGGGCGAGTCCGGTATGTTGTGTCAGGAGCTTCACCCTTATCCCCTGATG TCATGGAGTTTATGAAGATCTGCTTAGGCGGGCAAGTCCTTGAAGGATATGGAATGACTGAAACTTCCTGTGTCATAAGTGCCATGGATGAAGGTGACAA CCAAATCGGCCACGTTGGGTCTCCTAATCCAGCTTGCGAAGTAAAGCTTGAGGATGTTCCTGAAATGAACTACACTTCCAAGGATAAGCCTTATCCTCGT GGTGAAATATGCGTGAGGGGTCCCATTGTTTTCCAAGGCTACTATAAAGATGAAACTCAGACGAGAGAAGTAATTGATGGAGATGGTTGGCTTCATACTG GAGACATTGGATCATGGCTACCTGGAGGACGTCTAAAGATCATTGATAGAAAGAAGAACATTTTCAAGCTAGCACAAGGAGAGTACATAGCTCCAGAGAA GATAGAGAATGTATATGCTAAATGTAGATTCGTGGCTCAGTGCTTTGTGTATGGTGATAGCTTCAACTCGTCTCTGGTAGCTGTTGTTGCTGTTGACCCA GATGTGTTGAGAGATTGGGCTGCCTCTCAAGGCATCAAGTATCAGAACTTGGACCAACTGTGCAAAGAGAGAAGAACACGAGCTGCAGTGTTGGCTGATA TGGATGCCATTGGAAGAGAAGCTCAGCTAAGAGGGTTTGAGTTTGCAAAAGCTGTGACTTTGGTGGTGGAACCATTTACATTAGAGAATGGACTTCTGAC ACCAACTTTTAAGATAAAGAGAGCTCAAGCAAAGGAATACTTCCAGAGTGCAATATCAGAACTGTACAAAGAGCTTGCTGCAGCTGAAACTCCTGCTAAG TCAGCATTATGA
AA sequence Show only first row Show all	>Lus10010530 pacid=23156681 polypeptide=Lus10010530 locus=Lus10010530.g ID=Lus10010530.BGIv1.0 annot-version=v1.0 MEEPKGLMTTAAQRRMKAIHDHLTAPTESSPSNQLCQTPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSVRSPLKLVSRFPNNPEIGTLHENFVRAVDVYR DYKYLGTRIRVDGTVGDYKWMTFGEAGTARTSIGSGLMHYGIEKGASVGLYFINRPEWIIVDNACSAYSYVSVPLYDTLGPDAVKYIVNHATVQAIFCVP QTLNSLLSFLSEIPSVRVIVVVGGIDDQIPSLQSSTGVQVVTYSKLLSQGRSNLHPFCPPKPEDVATICYTSGTTGTPKGAVLSHENLIANVAGATYTTK FYPSDVYISYLPLAHIYERANQVMTVYFGVAVGFYQGDNMKLMDDLAALRPTIFCSVPRLYNRIYDGITNTVKSSGGLRERLFNAAYNAKKKALHSGQKA SPMWDRLVFNKIRDKLGGRVRYVVSGASPLSPDVMEFMKICLGGQVLEGYGMTETSCVISAMDEGDNQIGHVGSPNPACEVKLEDVPEMNYTSKDKPYPR GEICVRGPIVFQGYYKDETQTREVIDGDGWLHTGDIGSWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCRFVAQCFVYGDSFNSSLVAVVAVDP DVLRDWAASQGIKYQNLDQLCKERRTRAAVLADMDAIGREAQLRGFEFAKAVTLVVEPFTLENGLLTPTFKIKRAQAKEYFQSAISELYKELAAAETPAK SAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	2.0	0.9157
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	2.2	0.9199
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	3.0	0.9102
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	4.5	0.8900
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	6.0	0.8753
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.4	0.8865
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	8.8	0.8809
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	9.8	0.8818
					Lus10041943 [exp]	9.8	0.8804
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	10.8	0.8434

Compare expression of checked genes

Lus10010530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.