Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26240 1179 / 0 ATCLC-D, CLC-D chloride channel D (.1) AT5G49890 541 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 513 / 3e-171 Voltage-gated chloride channel family protein (.1) AT5G40890 503 / 1e-167 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 503 / 2e-167 ATCLC-B, CLC-B chloride channel B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002453 [exp] 1439 / 0 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10007433 [exp] 559 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 551 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 522 / 5e-173 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 500 / 4e-166 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10041567 [exp] 159 / 2e-43 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 100 / 7e-24 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090100 [exp] 1260 / 0 AT5G26240 1149 / 0.0 chloride channel D (.1) Potri.003G001500 [exp] 550 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 543 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 540 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 530 / 1e-177 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.T046200 [exp] 525 / 1e-175 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 518 / 3e-173 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.018G124100 [exp] 515 / 5e-172 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10010531 pacid=23156694 polypeptide=Lus10010531 locus=Lus10010531.g ID=Lus10010531.BGIv1.0 annot-version=v1.0 ATGTTGTCGAATCATTTGCAGAATGGAATTGAGACCGCTAATCAGTTGTGGTCTCGGATACCTAACTCGGAGGATGGAGAACTCGACGGAGGCACGCTAT TGGGCACTAGTGAAGGGGGAAATGTAGAGAGTCTTGATTATGAAGTAATTGAGAATTATGAGTACCGAGAAGAGCAGGCGCAGAGAGGGAAGCTGTATGT TGGATACTTTGTAGTTGTGAAGTGGTTCTTTGCATTGCTTATTGGAATTGGTACTGGATTAGCAGCTGTTTTCATCAATATATCGGTTGAGAACTTTGCT GGCTGGAAGTTTTCGTTGACATTTGCAGTAATACAAAAGTCTTATCTTGCCGGCTTTGTACTTTATGTACTAATCAATCTGGTTTTAGTTTTTTCATCTG TATATATCATCACCCATTTCGCACCTGCGGCAGCAGGGTCTGGTATTCCCGAAATCAAGGGTTATTTAAATGGAGTTGATATCCATGGTATCCTTCTCTT CAGAACCTTGGTCGGAAAGATATTTGGCAGCATTGGTTCTGTTGGAGGTGGTCTTGCTTTGGGCAAGGAAGGTCCTCTTGTTCATACTGGTGCTTGCATT GCTTCATTGTTAGGACAGGGTGGTACCACAAAGTATCATTTAAGTTCCCGGTGGCTTCATTTTTTCCAAAGTGATCGTGACCGCCGTGATCTGGTAACAT GTGGGTGTGCAGCTGGAGTAGCTGCTGCTTTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCATTGGAAGAAGTCACATCTTGGTGGCGGAGCCAACTTAT GTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCACTTGTGGTTGGTACTGCAATGGGATGGTGTAAGAGTGGAAAGTGTGGGCACTTTGGGTCAGGAGGT TTTATCATATGGGACGTGTCAGATGGTCAAGAGGACTACTCGTTTGAGGAGTTACTCCCGATGGCTGTTATCGGAGTGATTGGTGGTCTGCTTGGTGCCT TATTTAACCAGCTTACTCTATACATAACGTACTGGCGTCGAAACTATTTGCACAAAAAAGGAACCCATGTTAAGATAATTGAAGCTTGCATCATCTCAGT CATAACTTCAGCTATTTCTTTTGGACTTCCACTCCTAAGAAGGTGCAGTCCGTGTCCAGAATCTGGTACTGACTCTAGTATTGAGTGTCCGCGTCCTCCT GGAATGTATGGGAACTATGTCAGTTTCTTCTGTGGCAAGGACAAAGAATACAATGACCTTGCGACAATTTTCTTCAACACTCAGGATGATGCAATCAGGA ATCTCTTTAGTGCAAAGACAATCCATGAGTTCAGTGCTCAAAGTTTATTGACATTTCTGGTTATGTTTTACACATTAGCAGTCGTGACTTTTGGTACAGC TGTTCCAGCTGGTCAGTTTGTTCCTGGAATATTGATAGGGTCAACATATGGACGCCTTGTTGGAATGTTTGTCGTTAATTTTTACAAGAAACTCAACATC GAGGAAGGAACGTATGCTTTACTTGGAGCTGCTTCTTTCCTTGGAGGTTCAATGAGGATGACAGTGTCGTTATGCGTTATCATGGTTGAGATCACGAACA ATCACAAACAACTTGAAACTTCTGCCTCTTATAATGCTTGTGCTCCTTATCTCAAAGGCCTGTACGAAGAACAGGCAAGATTAAGGGGAATACCATTGCT GGAGGCTAAACCAAAATACCAGATGAGGACAATGAGTGCAAAGGAAGCTTGTGGTAATCAGAAGGTTGTTTCTCTTCCTCGTGTTGCTAAGGTCTCAGAT ATTGTTTCTATTTTGCGGAGCAATAAGCACAATGGATTTCCTGTAATTGATCATAAAAGAAATGGAGAAACACTTGTAGTTGGGCTTATGCTTCGCAGCC ATTTACTAGTACTTCTTCAGTCTAAGGTGGATTTCCAGCACAGTCCTTTGCCCTTTGAAACTCTAGGCAGGTCAAGACCAATCAGGCACAATTTTAACGA GTTTATAAAACCTGCATCGACCAAGGGTATTTCTGTAGAGGATATTCATTTGAGTTCAGATGACTTGGAAATGTACATAGATCTAGCACCCTTTTTGAAT CCCTCTCCATACGTAGTCCCAGAAGATATGTCTGTAACAAAAGTATATAATCTTTTTCGTCAACTTGGATTGCGACATATATTTGTCGTCCCTCGGCCTT CTAGAATTATCGGCTTAATCACTAGAAAGGATCTACTGATAGAGGATGGGGAGGATACGGGCAATGTGGAGCTCCAATCAACTAGTGTAAGATCTCAGCG TCATGACCCGACCGCCGGCTTTGTAAGGACCATGGAAGTGGAGCGGCCACTTCTGAATGGTCTTCTTCTGCCTCAACATCAGGCGTAA
AA sequence Show only first row Show all	>Lus10010531 pacid=23156694 polypeptide=Lus10010531 locus=Lus10010531.g ID=Lus10010531.BGIv1.0 annot-version=v1.0 MLSNHLQNGIETANQLWSRIPNSEDGELDGGTLLGTSEGGNVESLDYEVIENYEYREEQAQRGKLYVGYFVVVKWFFALLIGIGTGLAAVFINISVENFA GWKFSLTFAVIQKSYLAGFVLYVLINLVLVFSSVYIITHFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHTGACI ASLLGQGGTTKYHLSSRWLHFFQSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVALVVGTAMGWCKSGKCGHFGSGG FIIWDVSDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYITYWRRNYLHKKGTHVKIIEACIISVITSAISFGLPLLRRCSPCPESGTDSSIECPRPP GMYGNYVSFFCGKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGILIGSTYGRLVGMFVVNFYKKLNI EEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNHKQLETSASYNACAPYLKGLYEEQARLRGIPLLEAKPKYQMRTMSAKEACGNQKVVSLPRVAKVSD IVSILRSNKHNGFPVIDHKRNGETLVVGLMLRSHLLVLLQSKVDFQHSPLPFETLGRSRPIRHNFNEFIKPASTKGISVEDIHLSSDDLEMYIDLAPFLN PSPYVVPEDMSVTKVYNLFRQLGLRHIFVVPRPSRIIGLITRKDLLIEDGEDTGNVELQSTSVRSQRHDPTAGFVRTMEVERPLLNGLLLPQHQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	0	1
AT3G48860			unknown protein		Lus10016721 [exp]	1.0	0.9204
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	1.7	0.9074
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	6.0	0.8795
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	8.8	0.8648
AT1G23230			unknown protein		Lus10016701 [exp]	9.5	0.8775
AT3G04600			Nucleotidylyl transferase supe...		Lus10017122 [exp]	9.8	0.8796
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	11.7	0.9046
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	12.7	0.8201
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	15.6	0.8398
AT5G55060			unknown protein		Lus10040061 [exp]	17.1	0.9106

Compare expression of checked genes

Lus10010531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.