Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26340 903 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 635 / 0 STP7 sugar transporter protein 7 (.1) AT1G11260 602 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT1G77210 590 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT3G19940 588 / 0 Major facilitator superfamily protein (.1) AT1G50310 586 / 0 ATSTP9 sugar transporter 9 (.1) AT3G05960 584 / 0 ATSTP6 sugar transporter 6 (.1) AT5G26250 583 / 0 Major facilitator superfamily protein (.1) AT5G23270 566 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 556 / 0 STP12 sugar transporter protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002450 [exp] 1063 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 850 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 613 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 585 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002452 [exp] 565 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10002597 [exp] 563 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10036325 [exp] 561 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10005870 [exp] 560 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10022421 [exp] 556 / 0 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151100 [exp] 872 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 863 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 627 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 626 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 615 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.005G090700 [exp] 611 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 607 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 602 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 602 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G101900 [exp] 600 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10010534 pacid=23156669 polypeptide=Lus10010534 locus=Lus10010534.g ID=Lus10010534.BGIv1.0 annot-version=v1.0 ATGGCAGGTGGAGGATTCGCTTCGGCCGGAGGAACAGAGTTCGAAGCCAAGATTACTCCCATCGTCATCCTATCATGTATCATGGCCGCCACCGGCGGTC TCATGTTTGGCTATGATGTTGGTGTCTCAGGGGGAGTGACGTCGATGCCGCCGTTCCTGGAAAAGTTTTTCCCGGCGGTACACAGGAAGACACAGGACCC CAATATGGACAACAGTAACTATTGCAAGTATGACAACCAAGGATTGCAGTTGTTCACATCATCGCTCTACCTGGCCGGACTCACGGCTACGTTTTTCGCC TCCTACACCACCAGGACCCTCGGGAGGAGGCCCACCATGTTGATCGCTGGAATATTCTTCCTCGCCGGCGTGGTGCTCAACGCCGCCGCTCAGGACCTCG CCATGCTCATCATAGGCAGGATCTTGCTCGGATGTGGAGTCGGCTTCGCTAATCAGGCCGTGCCGTTGTTTTTATCGGAGATTGCACCGACGAGAATCCG TGGAGCTTTGAACATACTGTTCCAGCTGAATGTCACAATAGGCATTCTTTTTGCCAACTTGATCAACTATGGAACCGCCAAGATAAAAGGTGGATGGGGA TGGAGATTATCTCTAGGTCTGGCGGGAGTTCCAGCAGTCCTCCTAACCTTGGGAGCACTCATCGTATCAGAGACTCCAAACAGTTTGATAGAACGGGGTC GTTTAGATGAAGGTAAGGCTGTACTTAAGAGGATTAGAGGAACCGACAAGGTGGACCCAGAGTTCCAAGAGCTTGTCGACGCCAGCCTCATTGCTAAGGA AGTCAAACACCCTTTCAGAAACCTCCTCAAGCGCCGCAACCGCCCTCAATTAGTCATTGCTATCGCCTTACAGATATTCCAACAATGCACGGGGATCAAC GCCATAATGTTCTACGCCCCGGTCCTATTCAACACCTTGGGTTTCAAAAGCGATGCCTCCCTCTACTCCGCCGTCATCACCGGAGCGGTCAACGTCCTCT CAACAGTCGTCTCCATCTATTCCGTCGACAAGCTCGGCCGCCGCCTGCTCCTTCTAGAAGCCGGAGTCCAGATGTTCTTCTCCCAGGTAATCATCGCCGT CATCCTCGGGATCAAAGTCACCGACCACTCCGACGAACTCGGGAAAGGATTCGCCATCCTGGTGGTGATCATGGTCTGCACGTTTGTCTCCGCATTCGCA TGGTCGTGGGGCCCGCTCGGGTGGCTGATCCCGAGCGAGACGTTCCCGATGGAGACTAGGTCGGCGGGGCAGAGCGTGACAGTGTGCGTGAACTTGCTGT TCACGTTCGTAATAGCGCAGGCTTTCTTGTCGATGCTCTGCCACTTCAAGTTCGGGATATTCCTCTTCTTCTCCGGGTGGGTGGCGGTGATGTCGGTATT CGTGCTGTTCTTGGTGCCGGAGACGAAGAATATTCCCATCGAGGAGATGACGGAGAAGGTTTGGAAGCGGCATTGGTTCTGGAAGAGGTATATGGAGGAT GATGACGTGGAGCTTGATCATGTGCCTGCGAAGATCGAGGGGAAGAGCGGTGGTAATAGTAATGGGGTCGATAATCCTTCTTCTTAA
AA sequence Show only first row Show all	>Lus10010534 pacid=23156669 polypeptide=Lus10010534 locus=Lus10010534.g ID=Lus10010534.BGIv1.0 annot-version=v1.0 MAGGGFASAGGTEFEAKITPIVILSCIMAATGGLMFGYDVGVSGGVTSMPPFLEKFFPAVHRKTQDPNMDNSNYCKYDNQGLQLFTSSLYLAGLTATFFA SYTTRTLGRRPTMLIAGIFFLAGVVLNAAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGALNILFQLNVTIGILFANLINYGTAKIKGGWG WRLSLGLAGVPAVLLTLGALIVSETPNSLIERGRLDEGKAVLKRIRGTDKVDPEFQELVDASLIAKEVKHPFRNLLKRRNRPQLVIAIALQIFQQCTGIN AIMFYAPVLFNTLGFKSDASLYSAVITGAVNVLSTVVSIYSVDKLGRRLLLLEAGVQMFFSQVIIAVILGIKVTDHSDELGKGFAILVVIMVCTFVSAFA WSWGPLGWLIPSETFPMETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVAVMSVFVLFLVPETKNIPIEEMTEKVWKRHWFWKRYMED DDVELDHVPAKIEGKSGGNSNGVDNPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	0	1
AT5G57510			unknown protein		Lus10028472 [exp]	1.4	0.9835
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	1.4	0.9846
AT2G47485			unknown protein		Lus10033571 [exp]	2.2	0.9792
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	3.0	0.9771
AT2G47485			unknown protein		Lus10009156 [exp]	3.5	0.9788
AT2G14095			unknown protein		Lus10001300 [exp]	3.7	0.9779
AT3G50910			unknown protein		Lus10028325 [exp]	4.5	0.9725
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	4.7	0.9717
					Lus10000858 [exp]	6.0	0.9816
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	6.7	0.9656

Compare expression of checked genes

Lus10010534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.