Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 565 / 6e-172 TIC time for coffee (.1.2) AT3G63180 68 / 7e-11 ATTKL TICKLE, TIC-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002448 [exp] 1205 / 0 AT3G22380 520 / 9e-165 time for coffee (.1.2) Lus10002447 [exp] 380 / 3e-118 AT3G22380 110 / 9e-26 time for coffee (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089700 [exp] 895 / 0 AT3G22380 657 / 0.0 time for coffee (.1.2) Potri.008G151200 [exp] 887 / 0 AT3G22380 639 / 0.0 time for coffee (.1.2) Potri.002G052300 [exp] 327 / 2e-91 AT3G22380 219 / 2e-57 time for coffee (.1.2) Potri.005G210200 [exp] 291 / 3e-80 AT3G22380 290 / 6e-80 time for coffee (.1.2) Potri.003G029500 [exp] 118 / 3e-29 AT3G22380 81 / 3e-17 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010535 pacid=23156654 polypeptide=Lus10010535 locus=Lus10010535.g ID=Lus10010535.BGIv1.0 annot-version=v1.0 ATGGACAGGAATAGAGAGCCTAGAAGAGTGGCCAGGGCCGTGACCAACGGATTGAATAGACGACGACACAGAAGTGGCAGCCTTAGAGACTCTCCAGAGG ACGACGGACCTGTGGAGTTGGCGGAGACGGTGCGACTGCGAGATCGAGGGATTGCTAAAAAAGATCGAGATCGAGACAGAGAACGAGAACGAGAGCGGGA CAGAGAACGGGAAAGGGAACGAGATCGTGAGCGGGACAGAGAGCGTGATAGGGATCGGATGAGCAGCCATAACAAGAGGCGGCGTGGCGACCGTTTGATA CACGGCAGCATCAGAGAAGACGGTGCGGATGATAGTACAGATGATAGCATCAACGACGAGGAGGATGACGATGATGACGATGGAGGTGGAGGCGCGGCCA GCTCCCTCAGGATGTTACCTCCGAATCCTTCATCTCTTTCTTCTTCTTCCACTTTCTCAAATCACCACCATCGGAAGAGCTTTCCGCCGCCGGCCAAAGT TTTTAGAGCCTCTCCGGTCGTAACTGCCACCCCGTGGAAGGCCCCCGATGAGATGATTGGCGTGTCGGTGCCTAGAAAAGCTCGGTCTGCTTGCACGAAG AGGTCTCTCGATCCTTGGGCTTCAAGTGGCGGAGTTGGTGCGGAACCGATTCATCGGCAGACTTCCCAGTCTCCGGTGAGATCCGGCGGACCAGGGAGTT TAGCTTCAGCGTCCCCTTCCCCTGCACCTCTTTCACCCTCTTCTTCTAACGCTTCAGCTAAGAAAAAATTGAAGGCTAACGGGCCAAAGCAGAGACCCCC GAAATCATCCTCGAAATCCACTTCCTCAGCTCAAGACGAGATCGAGATTGAGATAGCGGAAGTGCTCTATGGACTGTTGAGGCAGCCGCAAGGACCTTCC AAGCAAGAAATCCTTTCTACAGATTTGAAAGAAGTGAACAAGTTCAGCTCAGATGCGAAATCAAGAGTCTCATCACCCATCTCCAACTCGCCGTCTGCTG TACCCCAATCTTCGTCTGCTCCTCCACCGGCTAATTCTACCTCTTCTGTTACGCCCTTGTCTGCAATTGCTCCTAAGCGGAAGAAACCCAGGCCGGTGAA GTATGAAGACGAAAGCCCCTCAATGTTTGCTGTTCGCGGCACCCTCCCTAAGCCACACAAAGTTGGCTCTGATGAATCTACGAAAATGGAGGCATCTACT TCCATGGTCGACAAGACTCACTTAGCGGTGGCGGAAAACGGTGTTGTAGGCTACGATTCATCTGCCAACAAGGCAACGACGACTGCCCTTTCAAATCAAT TTCAGGAGACGGCAAGGCCTGTTAATGACAGCACTTTGTCTGATGCGAAGCCGTTGACTGGCGATTCAGAGGTTAGAGATATGGGATTCACCAAAGAGGA GCCACAATCGTCGAGGAAGGAATCTACTTCATCTGGTCTCCGATTGGATAAAGATGGCGAGAATTCGGTGCCCGTGAAACCTAATTCAGCAGTTGCGGAG TGTGGAAATCCACATGAAGAGAAGTTCCAGATAGATCTGATGGCTCCTCCTCCGTCAAGATCATCTCCTGAAAGCGACAGTGAGCTTAATTCTGTGGCCG TAGATCCTAAACCTATGGTCACAGATGTGGAAACGGAAACGAAGCCTGCGGTCAAAGAAGACGACAAGGCGGTGAAACTTGTTGATGAGGATGTAAATGC AGGAGGGCCAGACGCAAAAAGGGCGAAAGTTACTGCACCTGGAGGAGGAGAAGGTTCCCAGAAACCAGAAAGAGATTGTAGAGAGAGGAATATTGATCTC CAGCTTGAATTGGAGAGGACAGAGAGGGATAATGGCAATTCTTCCTTCATTGGAAGCAAGTTGCATATACATCCCCAGAAGCCGCAGCAGCAGCAGCCAC AACCTAACCCAGATAAAGCTACCCAATCGTCGGCTCTTCCTTTGCCAATGTCTATGGCCAGCTGGCCTGGTGGGCTTCCACACATGGGCAGATACATGGC ACCCTTACAAGGCGTTGTATCCATGGATGGAAACGCCGTGGCTTCTACCCCTATTCAGCCTCCGCACCTACTTTATGGCCATAATCCACCACCAACTCGG CCAAAGAGGTGTGCAACACATTGCTACATTGCACGAACAATTCAGTATCATCAGCAATGTACGAGGTTGACGTCATTCTGGCCTGCTGCTGCTGCTGCTG GATCTACTTTGCAATATGGAGCTAAGGCCGTACCGACACCAGATCTACATGTTGGGAGGGGGTTGAATCCTGTGCAAGACAAAGGGCAGGGGGTTGCCGT CTTTCCTGGTCACGCTGGGAAGGAGAAGAACTCTCAAGCTGCTACTGCTGTGGATACTGCACAGAGAAAGCAACAAATTATGATTCAGCAAACATTGTCC CCAGGAGCGCCTAGCAATATCCTGCATGGCCCCGCGTTCATCTTTCCTCTGGGTCAACAGCAGTCAGGATCTGCTCCAGCTTCTGTGCGTCCAGGCCCTG GAAATGTTAAGTCTGCTACGCCACCAGGTTCTGCATCTACAACGAGTTCTGCAGCCACTCCATCAGTTTCTACTGCTGCCATGGCAATGGCGGGAGCAAC AGCTATGAGTTTTAATTATCCAAATATGCCTGGCAATGAGACTCAGTACTTGGCTTTTCTTCAGAATGGTGGATATCCGATTCCTATTCCAGCACATGTT GGTGCTGCATCGGGTTATAGGGGAACACCTCCATTGCCTTTCTTTAACGGGTCTTTCTACCCTTCCCAGATGCTTCATCCATCACAGATCCAGCTCCAAC AACAGCAGCAGCAGCAAACATCTCATCCTCAGTCTCAACAAAAGCAGCATGGTCACCAGAACCCTAGTATTTCTAGCGGGTCTTCATCATCACAGAAACA TTTGCAGAATCAACAGCAAAGGTCACACGGTCCTTCAGTCAATGGCGCTAGTGGAAATTTGCAGAACTTCACCCTTCCGAAGAACCAACCATCGCAGTCT CTTCAGCTTCACCAGAGGCAGCAGATCCAGAATCAAGGTTTTCCACCACATCAAGGGCGTCATCTTGAGAGTGAAATGGGTGGGGAAGATAGCCCATCAA CTGCTGACAGCCGGACCACCTCTCGACCAAACATGAGCATTTATGGCCAGAGTTTCTCAATGCCCATGCATCCTCCCAACTTTGCTTTGATGGGACCTGC ATCAATGGGAGGGATCAGCAGTACAGGTGTTAATTCCAGTGACAAGAAAATGCAGCAGCAACAACATAATCAAGGGTCCAAGACAGGAGTTGAACCCTTA CAGTCTCAAGCTTTTGCCATGTCTTTTGGGTCCATGAATGGAGCTACAGCTACTCCTGGCATTGACATTTCTTCAATTGCGCATAATCATGCTCTTTTCC AGAGCCTACCGGAGGCCACAAGACATGGGTATCAGTTCATGGCTGCTGCTGCAGCTGCCCAAGCAGCACAGCAAAGTAAGAAGAACAGTTACCGTGTTTC TGATGATGGGAAAAATGGTGGGAACAATGGATCACACCAAGAGGAAGACAGGAAGGCAGGAGGGAAGGCTCCATCTTCTGGACAGTCAATAGCTTTCTCG CGGACTGATTTGTCTGATGCATCTGTTTCAGGAATGCCAGCCAACAGTGTAATTGACAGCTCTGCGAGGACTCTCAACGTTGGTTCTTCTAACACTCGGC CAACGGGATCCATAATTTCACCAGCAAATAGCTCTGTAAATGGTTTACAGCAGCAATCACACAGACAACAGCAACAACACCAGCAACATCAGCAGCAACA TCAACAGCAACAACAACATCAGCAACAACAACAACATCAGCAACAACAACAACATCAACAGCAAATGATGCAACTTCATAAGCAGCACCAGTTTGCAGCC GCATCTGCAGCCTCTGCAAGGAATAATAAGCCTCCTTCTAGCAACGGAAATATTTTCCTTGACCATATGCCCCCATCATCCATGACAACAAAGTTTCCCG CTGCAATGTCTGGTTTTCCTCAGAATTTTCAGATAATGGCTGCTGCTGCAGCTGCCCAAGCAGCACAGCAAAGTAAGAAGAACAGTTACCGTGTTTCTGA TGATGGGAAAAATGGTGGGAACAATGGATCACACCAAGAGGAAGACAGGAAGGCAGGAGGGAAGGCTCCATCTTCTGGACAGTCAATAGCTTTCTCGCGG ACTGATTTGTCTGATGCATCTGTTTCAGGAATGCCAGCCAACAGTGTAATTGACAGCTCTGCGAGGACTCTCAACGTTGGTTCTTCTAACACTCGGCCAA CGGGATCCATAATTTCACCAGCAAATAGCTCTGTAAATGGTTTACAGCAGCAATCACACAGACAACAGCAACAACACCAGCAACATCAGCAGCAACATCA ACAGCAACAACAACATCAGCAACAACAACAACATCAGCAACAACAACAACATCAACAGCAAATGATGCAACTTCATAAGCAGCACCAGTTTGCAGCCGCA TCTGCAGCCTCTGCAAGGAATAATAAGCCTCCTTCTAGCAACGGAAATATTTTCCTTGACCATATGCCCCCATCATCCATGACAACAAAGTTTCCCGCTG CAATGTCTGGTTTTCCTCAGAATTTTCAGAGTAGTTCTAACCCTGCTCAGAGCCCTCAGTGGAAAAACTCGGTGAAGCTGGCCAACTCCCAAGTTCCTCC CTCGTCACTTAACTCAACTTCAGCATCTCTGAAGCCACTTCAACAACAGCAGAGCCGAGGCCAACCAGGTCATACCCAAATATCTTTTGCAGCGAATCCA AAGCAGTCGGGGACACCACAGGGCCAAGCACCTCCGAGTGGCACTCAATCTCCATCTCCCTCGATGGGGGTTGGTTCTCCTACTACGTCGTCGGTATCCA AGAGTGCTGGTGGAAGTCCAAGGACAACGTCAACATCAAATAACAGTAATAAAGGTGGGCAATCTTCAGTAATAACTTCGCAGCAGGGGAAGAATTCTCC GTCAGTTGGTATGCAAAAGTCATCTTCTGGTGGGGGGAGTATCCCATCAATTCTTGGTCATCCGCACAATACTCAGAGCTCTAATAATGGCTCGAAGAAC CAACTTCAGCAACAGCAGCAGCAACAACAACATGTGCCAAAGCATGCATTGCAAGCTCAGATGTTGTATGCAAGTGCGTACATGCAGGCCCAGCAAGCTC AACATGCTGCAAACAGTAATAGCAATGCTGCCTCTGCTCCGAATGGGTTCTATCTCCAGAGACATAGAGGGGAGCAGCAGCAGCAGCAGCAGAGCTCAAC CCCTCCATCATCAACGGGTATGCTGTCTTTGTGTCCACCAGCGAGTTTGGCAAATTCGCAGACGGCGGATCCTGCAAAGGCAGGTGCTGGTAACAACATG AAGAGTGGAGGGGTGTTAGCAATGCATGGGCAGTTTGGTGGGCAATCGTCAGGGAAAGGGGGGCATCATCAGCAAGCAGGAGGTGGAGGGTTCTCGTACT TACATGCGGTTCCTGGTGCAGTTCAGGTGAAACCGGCTGAACAGAAACAACATTCTGGTGAGTAA
AA sequence Show only first row Show all	>Lus10010535 pacid=23156654 polypeptide=Lus10010535 locus=Lus10010535.g ID=Lus10010535.BGIv1.0 annot-version=v1.0 MDRNREPRRVARAVTNGLNRRRHRSGSLRDSPEDDGPVELAETVRLRDRGIAKKDRDRDRERERERDRERERERDRERDRERDRDRMSSHNKRRRGDRLI HGSIREDGADDSTDDSINDEEDDDDDDGGGGAASSLRMLPPNPSSLSSSSTFSNHHHRKSFPPPAKVFRASPVVTATPWKAPDEMIGVSVPRKARSACTK RSLDPWASSGGVGAEPIHRQTSQSPVRSGGPGSLASASPSPAPLSPSSSNASAKKKLKANGPKQRPPKSSSKSTSSAQDEIEIEIAEVLYGLLRQPQGPS KQEILSTDLKEVNKFSSDAKSRVSSPISNSPSAVPQSSSAPPPANSTSSVTPLSAIAPKRKKPRPVKYEDESPSMFAVRGTLPKPHKVGSDESTKMEAST SMVDKTHLAVAENGVVGYDSSANKATTTALSNQFQETARPVNDSTLSDAKPLTGDSEVRDMGFTKEEPQSSRKESTSSGLRLDKDGENSVPVKPNSAVAE CGNPHEEKFQIDLMAPPPSRSSPESDSELNSVAVDPKPMVTDVETETKPAVKEDDKAVKLVDEDVNAGGPDAKRAKVTAPGGGEGSQKPERDCRERNIDL QLELERTERDNGNSSFIGSKLHIHPQKPQQQQPQPNPDKATQSSALPLPMSMASWPGGLPHMGRYMAPLQGVVSMDGNAVASTPIQPPHLLYGHNPPPTR PKRCATHCYIARTIQYHQQCTRLTSFWPAAAAAGSTLQYGAKAVPTPDLHVGRGLNPVQDKGQGVAVFPGHAGKEKNSQAATAVDTAQRKQQIMIQQTLS PGAPSNILHGPAFIFPLGQQQSGSAPASVRPGPGNVKSATPPGSASTTSSAATPSVSTAAMAMAGATAMSFNYPNMPGNETQYLAFLQNGGYPIPIPAHV GAASGYRGTPPLPFFNGSFYPSQMLHPSQIQLQQQQQQQTSHPQSQQKQHGHQNPSISSGSSSSQKHLQNQQQRSHGPSVNGASGNLQNFTLPKNQPSQS LQLHQRQQIQNQGFPPHQGRHLESEMGGEDSPSTADSRTTSRPNMSIYGQSFSMPMHPPNFALMGPASMGGISSTGVNSSDKKMQQQQHNQGSKTGVEPL QSQAFAMSFGSMNGATATPGIDISSIAHNHALFQSLPEATRHGYQFMAAAAAAQAAQQSKKNSYRVSDDGKNGGNNGSHQEEDRKAGGKAPSSGQSIAFS RTDLSDASVSGMPANSVIDSSARTLNVGSSNTRPTGSIISPANSSVNGLQQQSHRQQQQHQQHQQQHQQQQQHQQQQQHQQQQQHQQQMMQLHKQHQFAA ASAASARNNKPPSSNGNIFLDHMPPSSMTTKFPAAMSGFPQNFQIMAAAAAAQAAQQSKKNSYRVSDDGKNGGNNGSHQEEDRKAGGKAPSSGQSIAFSR TDLSDASVSGMPANSVIDSSARTLNVGSSNTRPTGSIISPANSSVNGLQQQSHRQQQQHQQHQQQHQQQQQHQQQQQHQQQQQHQQQMMQLHKQHQFAAA SAASARNNKPPSSNGNIFLDHMPPSSMTTKFPAAMSGFPQNFQSSSNPAQSPQWKNSVKLANSQVPPSSLNSTSASLKPLQQQQSRGQPGHTQISFAANP KQSGTPQGQAPPSGTQSPSPSMGVGSPTTSSVSKSAGGSPRTTSTSNNSNKGGQSSVITSQQGKNSPSVGMQKSSSGGGSIPSILGHPHNTQSSNNGSKN QLQQQQQQQQHVPKHALQAQMLYASAYMQAQQAQHAANSNSNAASAPNGFYLQRHRGEQQQQQQSSTPPSSTGMLSLCPPASLANSQTADPAKAGAGNNM KSGGVLAMHGQFGGQSSGKGGHHQQAGGGGFSYLHAVPGAVQVKPAEQKQHSGE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	1.4	0.9225
AT3G45830			unknown protein		Lus10036145 [exp]	7.5	0.8789
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	9.6	0.8959
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	10.6	0.8757
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	11.5	0.9032
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	12.2	0.8844
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	13.0	0.8808
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	17.3	0.8936
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	17.5	0.8676
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	17.5	0.8324

Compare expression of checked genes

Lus10010535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.