Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14950 548 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) AT1G05360 520 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004916 [exp] 725 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151300 [exp] 607 / 0 AT4G14950 610 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.010G089600 [exp] 597 / 0 AT4G14950 617 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.013G021700 [exp] 508 / 1e-179 AT4G14950 545 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.005G032200 [exp] 493 / 1e-173 AT4G14950 543 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010536 pacid=23156667 polypeptide=Lus10010536 locus=Lus10010536.g ID=Lus10010536.BGIv1.0 annot-version=v1.0 ATGGGGTTTGGAAACGGATCCACCGCCTCTTCTTCCCAAACTATGCCTTCCTCAATCACAGGCAAGCAATCACCTTCTTCATTTTTTAGTTTCTTTGTGC AATCCATTCTTGCGCCAGAACTTCGCGAGAAGCATCAACAGGAGCTGGACAGTTTGACACTAGCTACACAACCTCTCAAGACGTTGAAGTTTTTTGTTTT GGCTATATTTCAATATTTGAAGCTCTGTGTATTTTACCTTCTATCAAAAGGTGGTTGGCTGATGCTTCTGAGTGCCGTGGTGGTAGCTTTTGTTTTTCTG GTAGCTACTGTCGATGGTCCTCATGAAAAGCACCTTGAAGAAATATCTCAGTATTTACGATTTGGAATGTGGTGGATCGCTCTTGGTGTTGCATCATCAA TTGGTCTAGGATCTGGTTTGCATACTTTTGTTCTTTATCTTGGTCCTCATATTGCCTTGTTTACAATAAAAGCAATGCAATGTGGCCGTGTTGATTTAAA GAGTGCCCCATATGATACCATACAGCTAGATAGAGGTCCTTCATGGCTTGACAAAGATTGTCATGAATTTGGAGACCCTATATTTCAGTCGTACGATTTG TTGCGGGTGCCACTTAGCAGTATATTGCCAAATGTCCAGATAGAAGCTGTCTTGTGGGGGGTTGGGACTGCTCTGGGGGAGCTGCCTCCTTACTTCATCT CAAGGGCTGCACGTTTATCGGGCAGCAACATTGATGCCATGGAAGAATTGGAAGTTATTTCTGCCGAAGGTGATGGTGTCATTGCAACACGCCTGAATTC AATCAAACGCTGGCTTATGTCACATGCACAACATTTGAACTTCTTCACGATTTTAGCACTTGCTTCGGTACCAAACCCCCTATTTGACCTTGCTGGTATC ATGTGCGGCCAATTTGGGATCCCATTTTGGAAATTTTTTCTTTCGACAGTGATTGGCAAGGCAATCATCAAGACTCACATACAGACGATATTCATAATAT GTGTTTGCAATAACCAACTCCTAAACTGGGTAGAGAATGAGATGATTTGGATGTTCAGTTTCATACCGGGTTTGGCGTCTATCCTCCCCAACCTGATAAC CAAACTGCATGAAATGAGAGAAAAGTTTCTTGCACCAACTCCTGCTCTGCCCACTACGAAGGTTAAAAAGTGGGATTTCTCGTTTACTGCAATCTGGAAC ACTGTAGTATGGCTCATGCTACTCAATTTCTTGTTCAAGATTATGAGCTCAATGGCCCAGACGTATCTGAAAAGACAGCAGGAGAAGGAGGTTACTGACT TGAGGAACCAAGAATCAGCTCTAACACATTCAGATTAG
AA sequence Show only first row Show all	>Lus10010536 pacid=23156667 polypeptide=Lus10010536 locus=Lus10010536.g ID=Lus10010536.BGIv1.0 annot-version=v1.0 MGFGNGSTASSSQTMPSSITGKQSPSSFFSFFVQSILAPELREKHQQELDSLTLATQPLKTLKFFVLAIFQYLKLCVFYLLSKGGWLMLLSAVVVAFVFL VATVDGPHEKHLEEISQYLRFGMWWIALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLDRGPSWLDKDCHEFGDPIFQSYDL LRVPLSSILPNVQIEAVLWGVGTALGELPPYFISRAARLSGSNIDAMEELEVISAEGDGVIATRLNSIKRWLMSHAQHLNFFTILALASVPNPLFDLAGI MCGQFGIPFWKFFLSTVIGKAIIKTHIQTIFIICVCNNQLLNWVENEMIWMFSFIPGLASILPNLITKLHEMREKFLAPTPALPTTKVKKWDFSFTAIWN TVVWLMLLNFLFKIMSSMAQTYLKRQQEKEVTDLRNQESALTHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	2.0	0.9133
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	4.6	0.8958
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	5.7	0.8815
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	6.7	0.8807
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	7.7	0.8671
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	9.4	0.9045
AT5G03460			unknown protein		Lus10023922 [exp]	10.0	0.8851
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	10.2	0.8706
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	10.4	0.8631
AT3G20920			translocation protein-related ...		Lus10014906 [exp]	11.9	0.8425

Compare expression of checked genes

Lus10010536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.