Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32150 338 / 7e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 258 / 2e-86 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G02230 240 / 4e-79 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59480 224 / 1e-72 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 223 / 2e-72 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004914 [exp] 511 / 0 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 237 / 2e-78 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 239 / 5e-78 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010848 [exp] 236 / 6e-77 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024382 [exp] 235 / 1e-76 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 229 / 8e-75 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 226 / 2e-73 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 226 / 3e-73 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 224 / 2e-72 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151700 [exp] 431 / 8e-155 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 423 / 2e-151 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 251 / 3e-83 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G185300 [exp] 247 / 2e-81 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G086900 [exp] 246 / 3e-81 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 238 / 4e-78 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 232 / 7e-75 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10010537 pacid=23156642 polypeptide=Lus10010537 locus=Lus10010537.g ID=Lus10010537.BGIv1.0 annot-version=v1.0 ATGGATTTCCGCAGCAACACTACTACTTGCGACTCCTTTTCCCCTTTCCACTGCCTTCTCTTTGATTTAGACGATACGCTTTACTCTTCCAAGCTCGGAA TAGCTGAAGCTCTCCGCAACAACATCGACGATTTTCTTGTTGAGAAATGTGGATTCCCTCCGAGCAAAGCTCCAAGTCTCCGATCAGAGCTCTTCAAAAC CTACGGCAGCTCTCTCGCCGGCTTGCGCGCATTAGGTTACAACATCGATGCCGATGATTACCATAGTTTCGTGCACGGAAGATTGCCGTACCACCTGATC AAACCAGACCCGCAGCTATCCAACCTCCTCACAACCATTCCGCAAAGAAAACTCATATTCACTAACTCGGACAGAAACCACGCGATCGCAGTGCTGGAGA GGTTAGGATTGGAGGACTGTTTCGATCAGATCATCTGCTTTGAGACCATGAACCCTAACCTCCCCAATTCCACCCGACCCGACGAATTCCCCGTTCTCCT CAAGCCCTCCATGGACGCCATGAGAATCGCACTCCGTGCCGCCGATGTCGATCCCCGTCGCACGCTGTTTCTGGACGATAACTCACGCAACGTGGCAGCA GGGAAAGCGCTGGGCCTCCGCACCGTTCTGGTTGGGAAGACGGTAAAGATCCCAGAAGCTGACTACGTCCTGGAGAAGATACACAATCTTGCCCAGGCTG TTCCGGAGATTTGGGTCACCGGCGATCAAAGGATTAGCCGCAGCAAGAGCGATATGGATTCCATTCTCGCCACCACTGCAGCCACCGTTGGGGCCTAG
AA sequence Show only first row Show all	>Lus10010537 pacid=23156642 polypeptide=Lus10010537 locus=Lus10010537.g ID=Lus10010537.BGIv1.0 annot-version=v1.0 MDFRSNTTTCDSFSPFHCLLFDLDDTLYSSKLGIAEALRNNIDDFLVEKCGFPPSKAPSLRSELFKTYGSSLAGLRALGYNIDADDYHSFVHGRLPYHLI KPDPQLSNLLTTIPQRKLIFTNSDRNHAIAVLERLGLEDCFDQIICFETMNPNLPNSTRPDEFPVLLKPSMDAMRIALRAADVDPRRTLFLDDNSRNVAA GKALGLRTVLVGKTVKIPEADYVLEKIHNLAQAVPEIWVTGDQRISRSKSDMDSILATTAATVGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10010537 [exp]	0	1
AT1G27300			unknown protein		Lus10037034 [exp]	7.3	0.8675
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	8.9	0.8726
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	15.3	0.8456
AT3G51130			unknown protein		Lus10025972 [exp]	20.4	0.8571
AT1G07040			unknown protein		Lus10013272 [exp]	20.7	0.8523
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	21.2	0.8085
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	24.3	0.8593
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	25.2	0.8270
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	26.8	0.8311
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	29.7	0.7983

Compare expression of checked genes

Lus10010537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.