Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 437 / 1e-154 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 154 / 4e-44 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 150 / 2e-42 SPDS2 spermidine synthase 2 (.1) AT5G53120 117 / 9e-30 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004913 [exp] 658 / 0 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026457 [exp] 429 / 1e-150 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000469 [exp] 380 / 1e-131 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10033437 [exp] 377 / 2e-130 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 141 / 4e-39 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10029169 [exp] 138 / 7e-38 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 138 / 1e-37 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 127 / 7e-34 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 125 / 8e-33 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089200 [exp] 553 / 0 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 549 / 0 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 442 / 2e-156 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G147200 [exp] 146 / 8e-41 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G094600 [exp] 145 / 1e-40 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 122 / 9e-32 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 115 / 4e-29 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10010538 pacid=23156661 polypeptide=Lus10010538 locus=Lus10010538.g ID=Lus10010538.BGIv1.0 annot-version=v1.0 ATGGGTGAGATATCTTGCTCCGCTAATGGCCTCATGACCCATTCATCATCTAATTCATCTCCACCGCCTAACGGCTACAGGAAGAGTTGCTGGTACGAGG AAGAGATTGAAGAGAACTTACGTTGGTCTTTTGCTCTCAATAGTATTTTGCATACAGGATCGACGCAGTACCAGGAGATTGCATTGTTCGACACAAAGCC GTTTGGGAAGGCGCTGGTTATCGATGGGAAGCTACAGAGTGCTGAGGTGGATGAGTTCATCTACCATGAATCCCTTGTCCATCCCCCACTCCTTAATCAT TTCAACCCAAGGAGTGTGTTCATAATGGGAGGAGGTGAAGGCTCAACTGCCAGAGAAATCCTCAGGCACACAACAGTTGATAAGGTTGTCATGTGCGACA TTGACGAGGAAGTGGTGGAGTTCTGCAAGACCTACTTGGTTGTCAACACTGAAGCATTTGAGGATCCCAGATTGGAGGTTGTAATAAACGATGCAAGGGC TGAGCTAGAGAACAGACAAGAAAGGTATGATGTGATCATTGGAGACTTGGCTGACCCAATTGAAGATGGCCCTTGCTACAAACTATACACCAAGTCCTTT TACGAGTCCACTGTCAAGCCCAAGCTCAACCAGGGTGGCGTTTTTGTCACTCAGGCTGGTCCGGCAGGAATTTTCAGCCACACAGAAGTCTTCACTTGTA TCCACAACACTTTGAGACAGGTGTTCAAATATGTTGTTCCATATGGTGCTCACATTCCCTCGTATGCTGATACTTGGGGATGGGTTATGGCTTCGGATAG CCCATTGGGGCTAAGTTGTGAAGAGATGGACCAGAGGATGAAACAAAGAGTGAAAGGAGAGAACAAGTTTCTTGATGGCATCACCTTCTCCTCTGCATCC AACTTGAACAAAGCTGTCCGCAAATCGCTGGATAGCGAAACTCATGTTTACACAGAAGGGACAGCGAGATTCATATACGGGCATGGCAAGAAAGACAACG ATCGATGTGAAAGAATTAATGGACAAAATTAA
AA sequence Show only first row Show all	>Lus10010538 pacid=23156661 polypeptide=Lus10010538 locus=Lus10010538.g ID=Lus10010538.BGIv1.0 annot-version=v1.0 MGEISCSANGLMTHSSSNSSPPPNGYRKSCWYEEEIEENLRWSFALNSILHTGSTQYQEIALFDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPPLLNH FNPRSVFIMGGGEGSTAREILRHTTVDKVVMCDIDEEVVEFCKTYLVVNTEAFEDPRLEVVINDARAELENRQERYDVIIGDLADPIEDGPCYKLYTKSF YESTVKPKLNQGGVFVTQAGPAGIFSHTEVFTCIHNTLRQVFKYVVPYGAHIPSYADTWGWVMASDSPLGLSCEEMDQRMKQRVKGENKFLDGITFSSAS NLNKAVRKSLDSETHVYTEGTARFIYGHGKKDNDRCERINGQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	1.0	0.8064
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	3.9	0.6992
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	5.7	0.6973
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	11.2	0.6682
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016979 [exp]	22.4	0.6689
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	30.4	0.6509
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	48.4	0.5784
AT1G60460			unknown protein		Lus10036440 [exp]	50.2	0.6036
AT2G32280			Protein of unknown function (D...		Lus10018495 [exp]	73.4	0.5516
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	73.6	0.5662

Compare expression of checked genes

Lus10010538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.