Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31670 77 / 5e-16 Copper amine oxidase family protein (.1) AT1G31710 75 / 2e-15 Copper amine oxidase family protein (.1) AT1G31690 73 / 9e-15 Copper amine oxidase family protein (.1) AT4G14940 67 / 1e-12 ATAO1 amine oxidase 1 (.1) AT4G12290 64 / 1e-11 Copper amine oxidase family protein (.1) AT4G12280 59 / 2e-10 copper amine oxidase family protein (.1) AT3G43670 57 / 3e-09 Copper amine oxidase family protein (.1) AT1G62810 54 / 3e-08 Copper amine oxidase family protein (.1) AT2G42490 44 / 5e-05 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026757 [exp] 89 / 3e-20 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 76 / 2e-15 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 68 / 5e-13 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 61 / 2e-10 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 60 / 3e-10 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 59 / 8e-10 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10041208 [exp] 58 / 1e-09 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1) Lus10010540 [exp] 80 / 0.0001 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 0 / 1 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 88 / 8e-20 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 83 / 4e-18 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 80 / 5e-17 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 69 / 2e-13 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118200 [exp] 58 / 1e-09 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 46 / 1e-05 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 45 / 3e-05 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 41 / 0.0006 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 0 / 1 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain
Representative CDS sequence Show only first row Show all	>Lus10010539 pacid=23156688 polypeptide=Lus10010539 locus=Lus10010539.g ID=Lus10010539.BGIv1.0 annot-version=v1.0 ATGGTAGTGGACCTTGACGAGATGAAGATTGTCGATTTTAGTGTCAGGGAATTTGTGCCGTTGCCCAAAGTCGACGACATCACGTCTGAGTATAGGATGG ATGAACTGGGAACTGCACGTGGCATTCGACGCCCGTCCGGGTCTAGTGATATCCCGGGCCCGAATCTACGACCCGGAAAAGCATGCTTTCCGCAGCGTCT TATACAGAGGACACCTCCGGGGACTACTATTTCCGAACATTCTTCGACTGCGGTGAATTCGGGTTTGGTCTCTCCGCCGTGTCCCTCGTCTCTCGCGGCG ATTGCCCTTCCAACGCCGTCTTCATGGACGGTTATTACGCCAGTTCCGACGGAACTCCCGTCAAAGTCCCCAATGTGTTCTGCATATTCGAGAGGCACGC TGGCGAAATCATGTGGCGCCACACTGAAGCCCACATCCCCCGTCAACTGGTATACGTGGCGCCACGTGATCAATGAAGTGAGAGCAGAGGTTAGCCTGGT GATAAGGATGGTAGCCACAGTTGGAAACTGTGATCACATCGTTGATTGGGAGTTCAAGCCCAGTGGGTCCATTAAGGTCCAAGTGGGCCTCAGTGGAATT GTAGAAGCAAACCAGTCAATTTCAGCACTTCAGCCCATATCACAGAAGAAGCCCACAAAACTCTACTCGCGTCCAATACAATTGGACTATACCACGACCA TTTCTTGA
AA sequence Show only first row Show all	>Lus10010539 pacid=23156688 polypeptide=Lus10010539 locus=Lus10010539.g ID=Lus10010539.BGIv1.0 annot-version=v1.0 MVVDLDEMKIVDFSVREFVPLPKVDDITSEYRMDELGTARGIRRPSGSSDIPGPNLRPGKACFPQRLIQRTPPGTTISEHSSTAVNSGLVSPPCPSSLAA IALPTPSSWTVITPVPTELPSKSPMCSAYSRGTLAKSCGATLKPTSPVNWYTWRHVINEVRAEVSLVIRMVATVGNCDHIVDWEFKPSGSIKVQVGLSGI VEANQSISALQPISQKKPTKLYSRPIQLDYTTTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	0	1
					Lus10001872 [exp]	1.0	0.9993
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	1.4	0.9984
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	3.0	0.9892
					Lus10004634 [exp]	4.0	0.9850
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	4.5	0.9674
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	6.7	0.9413
					Lus10006761 [exp]	6.9	0.9339
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	7.5	0.9498
AT3G19550			unknown protein		Lus10002115 [exp]	8.5	0.9567
					Lus10038743 [exp]	14.5	0.9363

Compare expression of checked genes

Lus10010539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.