Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31710 746 / 0 Copper amine oxidase family protein (.1) AT1G31690 735 / 0 Copper amine oxidase family protein (.1) AT1G31670 687 / 0 Copper amine oxidase family protein (.1) AT4G14940 651 / 0 ATAO1 amine oxidase 1 (.1) AT4G12290 593 / 0 Copper amine oxidase family protein (.1) AT1G62810 589 / 0 Copper amine oxidase family protein (.1) AT3G43670 571 / 0 Copper amine oxidase family protein (.1) AT4G12280 298 / 5e-96 copper amine oxidase family protein (.1) AT4G12270 288 / 6e-90 Copper amine oxidase family protein (.1) AT2G42490 277 / 1e-82 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026757 [exp] 808 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 734 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 733 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 647 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10032209 [exp] 570 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 566 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 553 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 545 / 0 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10041208 [exp] 295 / 7e-93 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 896 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 763 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 759 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 708 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 603 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 592 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 270 / 4e-80 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 270 / 4e-80 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 267 / 6e-79 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10010540 pacid=23156634 polypeptide=Lus10010540 locus=Lus10010540.g ID=Lus10010540.BGIv1.0 annot-version=v1.0 ATGGCTACCCCTTTCATCTCCAGACTCCTCTTCCTCTTCTTCTTCTTCATGTTAGCCATTTCCCCAATGTCGAGCTACAAACAGTACCACCCTTTAGACC CACTTAGCAGCGAAGAAATCACATTGGTCCAGCTCATCGTCAAAAAAGCCTACCCAAATCACTTAGTCCCCGTTTTTCACTACGTTGGCTTAGACGAGCC CGAAAAGAACGATGTCCTTTCATGGCTATCTCAGCCCACGCGAGCCAAACCACTCCCTCGTCAGGCTCAGGTCATCCTCCAAGTTGACAAGCAAACCCAT GAACTAACCGTTGACCTTTCGACTCGGGGGATCCTGACCAAATCCATCCACAAAGGACCAGGGTTCCCTTCTCTAACCCTCCAAGAGCAAACGGACGCTA ATGCCCTGCCGTTAACTTACCGTCCGTTCATTCGCTCGGCCGCCAAGAGAGGGATTAACGTGTCTGAAGTGGTGTGTTCTGCGTTTACGGTTGGGTGGTT TGACGAGAAGGAGTTTGACCGGAGGAGGGTTGTGAAGCTGCAGTGTTTTTCCAAGAAGGACACGGTTACTATTTATTTACTGCCCATTGAAGGGTTGACC ATTGTGGTTGACTTAGATGAGATGAAGATCGTAGAGTATGAAGATAGGGAGGTAGCTCCCATGCCCAAAGCTGAAGGGACTGAGTACAGATTGTCGGAAC TGCCCTTGCCTCATGGTCCTCGTATCAATGGTGCTGTCCTTGTTCAGGAGAATGCCCCTGGTTTCACTCTTGAGGGCAATGTCGTCAGGTGGATGAATTG GGAGTTCCACGTGGCGTATGACGCTCGTCCGGGTCTGGTCATATCCACGGCGAGAATCTACGACCAAGACAAAAAGGGATACCGCAGCGTGATGTACAGA GGGCACATCTCGGAGCTTTTCGTGCCTTACCAGGATCCTACTGAAGACTATTACTACAAGACATTCTTCGACGCCGGGGAGTTTGGATTCGGTGTATCCG CCGTTTCGTTAATTCCCAACGGCGATTGCCCCTCCCACGCTGTTTATATGGACGCATTCTACGCCGGACCGGATGGAACTCCGGTCCAAGTCCCCAACGT TTTCTGCATATTTGAAAGACACGCCGGCGAAGTCATGTGGCGCCACACCGAGCTAGGTATCCCAGACGTCACGATAGCAGAGTCGAGGCCAGAAGTGAGC CTCGTGGTCCGAATGATCGTCACAGTTGGTAATTACGACCACGTGGTGGATTGGGAGTTCAAGCCAAGCGGTTCAATCAAAACCCAAGTCGGTCTGACCG GAATTCTAGAAGTGAAAGCAGCCAACTACACTCACGCCGATCAGGTGGCGAAAAGCGAGGAAGCGCACGGCACATACCTGGCGGACTACACAATAGGACT GTACCACGATCATTTCTTGGCATACTATCTCGACCTCGACATCGACGGTGCCTCCAACTCCTTCGTCAAGAAAAACCTCGTAACAAGAAAAACCACCACC CATACTACCCCAAGGAAAAGCTACTGGACCGTAGTGTCCGAGACAGCGAAAACTGAGTCGGAGGCCAAGATCCGATTGGGAACCAACCCAACCGAACTGG TCATCGTAAACCCAAACAAAAAGACCAGACCAGGGAACCCGTTCGGATACCGGTTGATACCCGGTGCAATGATTCACCCACTGCTGACGGATGACGATTA CCCACAAATACGCGGGGCGTTCACGAAATACAATGTATGGGTTACGCCGTACAATAAGACGGAGCGCTACGCCGGAGGAAAGTACGTTGACCAAAGTCAA GGGTTGGACGGGCTGGCGGTTTGGACAAAACATAATAGGAAGATTGAGAACAAGGACATTGTGATGTGGTACGTGATGGGATTCCACCACGTGCCCTGTC AAGAGGATTTTCCAATGATGCCGACTTTAACCGGAGAGTTTGAGCTTCGCCCGACGAATTTCTTCGAGCAGAGTGCTGTGCTCAAAGCCGTGCCTCCTCC GCCAATGAAGGCGGGTTGA
AA sequence Show only first row Show all	>Lus10010540 pacid=23156634 polypeptide=Lus10010540 locus=Lus10010540.g ID=Lus10010540.BGIv1.0 annot-version=v1.0 MATPFISRLLFLFFFFMLAISPMSSYKQYHPLDPLSSEEITLVQLIVKKAYPNHLVPVFHYVGLDEPEKNDVLSWLSQPTRAKPLPRQAQVILQVDKQTH ELTVDLSTRGILTKSIHKGPGFPSLTLQEQTDANALPLTYRPFIRSAAKRGINVSEVVCSAFTVGWFDEKEFDRRRVVKLQCFSKKDTVTIYLLPIEGLT IVVDLDEMKIVEYEDREVAPMPKAEGTEYRLSELPLPHGPRINGAVLVQENAPGFTLEGNVVRWMNWEFHVAYDARPGLVISTARIYDQDKKGYRSVMYR GHISELFVPYQDPTEDYYYKTFFDAGEFGFGVSAVSLIPNGDCPSHAVYMDAFYAGPDGTPVQVPNVFCIFERHAGEVMWRHTELGIPDVTIAESRPEVS LVVRMIVTVGNYDHVVDWEFKPSGSIKTQVGLTGILEVKAANYTHADQVAKSEEAHGTYLADYTIGLYHDHFLAYYLDLDIDGASNSFVKKNLVTRKTTT HTTPRKSYWTVVSETAKTESEAKIRLGTNPTELVIVNPNKKTRPGNPFGYRLIPGAMIHPLLTDDDYPQIRGAFTKYNVWVTPYNKTERYAGGKYVDQSQ GLDGLAVWTKHNRKIENKDIVMWYVMGFHHVPCQEDFPMMPTLTGEFELRPTNFFEQSAVLKAVPPPPMKAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	0	1
					Lus10014719 [exp]	1.0	0.9896
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	1.7	0.9809
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	2.0	0.9846
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	3.9	0.9728
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10003581 [exp]	4.4	0.9482
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	5.2	0.9409
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	5.3	0.9758
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	5.9	0.9674
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	6.5	0.9724
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025620 [exp]	8.6	0.9311

Compare expression of checked genes

Lus10010540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.