Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31710 753 / 0 Copper amine oxidase family protein (.1) AT1G31690 742 / 0 Copper amine oxidase family protein (.1) AT1G31670 699 / 0 Copper amine oxidase family protein (.1) AT4G14940 659 / 0 ATAO1 amine oxidase 1 (.1) AT1G62810 624 / 0 Copper amine oxidase family protein (.1) AT4G12290 605 / 0 Copper amine oxidase family protein (.1) AT3G43670 592 / 0 Copper amine oxidase family protein (.1) AT4G12280 340 / 2e-112 copper amine oxidase family protein (.1) AT2G42490 278 / 7e-83 Copper amine oxidase family protein (.1) AT4G12270 265 / 3e-81 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004912 [exp] 1207 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 734 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 695 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 649 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024568 [exp] 610 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 605 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 600 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 478 / 1e-164 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10041208 [exp] 297 / 1e-93 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151900 [exp] 923 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 923 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 809 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 704 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 626 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 610 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 283 / 5e-85 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 274 / 2e-81 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 269 / 1e-79 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10010542 pacid=23156655 polypeptide=Lus10010542 locus=Lus10010542.g ID=Lus10010542.BGIv1.0 annot-version=v1.0 ATGCAAATATACAACACTCCACTCCACTCACAGTTACTACTCCCCTTCTTCTTCATCCTCATCCTCTCCCCCACGATACCCATTTCCCTTTCAACTCACC CACTCGACCCATTAACTCCGGCCGAGTTCACCGTCGCCGCAACCACCGTCCGTAAATCCTACCCAAACAACACCTCCGTCACCTTCCACTACATCGGTCT CAGAGAACCCCACAAGACCACCGTACTTACCTACCTAAACCACAACCACCGCCACAACTCCACCGCCGCTATCCCTCCGCCGCGCCGGGCCTTTGTTATC ATCCGCGTAAACCACACAACCACCCACGAGATCACCGTCGACCTTACACGTTCCAAACTGATTTCCAACCGAGTCTACGCAGGCAACGGCTACCCTATCT TCACCGGCGAAGAGCTAGTGGCATCGGGGGAGCTGCCCTTCCAATACGCACCGTTTCTGGAGTCCATACGCAAGAGAGGGCTCAACGTGAATGAAACCAT ATGCCAGGGATCTGGGATTGGGTGGTTCGGAGAGAAGGAGAAGGGGGGACGGATTGTGAAAGTTATGTGCAACTCTTTGGAGGGGTCTGTCAATTTGTTT ATGCGGCCGATTGAAGGGATCACTGTTACCGTCGATCTCGATCGGATGGAGATAATTGGATATAGAGATCGGTCCATAGTCCCTGTTCCCAAAGCGGACG GGACTGATTACAGAGGATCGAAGCAGAGGCCGCCTTTTGGGCCGGGCGTTAATCGAGTCAATTTTGTTCAGCCCAACGGCCCAACCTTCCGCATCGATGG CCATAGAATCAGGTGGGCCAACTGGGATTTCCATCTGGGCTTCGACATGCGGGCCGGGCCGATCGTATCGCTGGCATCGATCTTCGACGTCGAGAAGCAG AAGTTCCGTCGAGTCATGTACAGAGGGTTCGTCTCGGAACTGTTCGTGCCGTACATGGACTTAACCGAGGAATGGTACTACAGAACTTACTTCGACGCCG GGGGGTGCGGCTCCGGCCTGTGCGCCACCTCGCTGTTACCTGGCGCTGACTGCCCTGACAACGCTATTTTCATGGACGCTTACGTTACTGACCAAGACGG GGTGGCCTTCCAGATCCCGAAAACTTTCTGCATCTTCGAGAAGTACGCCGGCGACATATTGTGGCGCCACACCGAGCTCGCCGTTTCCGACGAAGTAACA GAGGTGAGGCCAGAGGTGAGCTTGGTGGTGAGAATGCTTTCCACAGTGGGAAATTATGACTACATAAATGACTGGGAATTCAAGCAGACCGGCTCCATTA AAGTCACGGTTGGCTTGACAGGTTTGCTAGAGGTTAGAGGAACCGAATACACACACAAGGACCAAATCCAGGAAGAATCATACGGCACATTATTGGCAGA GAACACTATCGGCACACACCACGACCATTTCCTAACGTACCATTTGGATCTGGACGTAGACGGAGAAGACAACTCTTTTCTCAAATCCAAATTACAACCC ACCAGAGTTCCCAATCACACCTCCCCCAGGAAGAGCTACTGGACAGTGGTGACCGACACTGCCAAGACAGAGTCCGAAGCCAAAATCAGGCTCGGACTAG AGCCGGTCGACCTATCGTTCATTAATCCTAACAAGAAGACCAAGGTGGGGAACACCGTGGGATATAGTGTGGTCCCGGGATCAGCGGCAGGACCTTTGCT ATCGGACGACGATTACGCGCAGATGAGGGGAGCGTTCACCAATTACAATGTGTGGGTGACACCGTATAACGAGAGTGAGAAATGGGCGGCGGGGATTTAC GTTGACCAGAGTCGTGGGGATGATACTTTGGCGACTTGGAGCGCTAGGGATAGGGAGATTGAGAACAAGGATATTGTGTTGTGGTATACGTTGGGGTTTC ATCATGTGCCCTGTCAAGAAGATTTTCCAATCATGCCGACTTTGAGCACTGGGTTTGAGCTCCGGCCGAATAACTTCTTCGATAGGAATCCAGTTCTGAA GGCATTCATAAGCTGA
AA sequence Show only first row Show all	>Lus10010542 pacid=23156655 polypeptide=Lus10010542 locus=Lus10010542.g ID=Lus10010542.BGIv1.0 annot-version=v1.0 MQIYNTPLHSQLLLPFFFILILSPTIPISLSTHPLDPLTPAEFTVAATTVRKSYPNNTSVTFHYIGLREPHKTTVLTYLNHNHRHNSTAAIPPPRRAFVI IRVNHTTTHEITVDLTRSKLISNRVYAGNGYPIFTGEELVASGELPFQYAPFLESIRKRGLNVNETICQGSGIGWFGEKEKGGRIVKVMCNSLEGSVNLF MRPIEGITVTVDLDRMEIIGYRDRSIVPVPKADGTDYRGSKQRPPFGPGVNRVNFVQPNGPTFRIDGHRIRWANWDFHLGFDMRAGPIVSLASIFDVEKQ KFRRVMYRGFVSELFVPYMDLTEEWYYRTYFDAGGCGSGLCATSLLPGADCPDNAIFMDAYVTDQDGVAFQIPKTFCIFEKYAGDILWRHTELAVSDEVT EVRPEVSLVVRMLSTVGNYDYINDWEFKQTGSIKVTVGLTGLLEVRGTEYTHKDQIQEESYGTLLAENTIGTHHDHFLTYHLDLDVDGEDNSFLKSKLQP TRVPNHTSPRKSYWTVVTDTAKTESEAKIRLGLEPVDLSFINPNKKTKVGNTVGYSVVPGSAAGPLLSDDDYAQMRGAFTNYNVWVTPYNESEKWAAGIY VDQSRGDDTLATWSARDREIENKDIVLWYTLGFHHVPCQEDFPIMPTLSTGFELRPNNFFDRNPVLKAFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	0	1
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	2.6	0.8976
					Lus10041664 [exp]	4.0	0.8963
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	7.7	0.8957
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	8.9	0.8949
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	9.7	0.8686
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	11.5	0.8670
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	13.4	0.8463
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	13.8	0.8395
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	14.8	0.7382
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	14.9	0.8328

Compare expression of checked genes

Lus10010542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.