Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 304 / 3e-98 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 304 / 4e-98 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26210 301 / 3e-97 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26300 300 / 1e-96 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13110 298 / 6e-96 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT1G13080 291 / 2e-93 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT1G13090 291 / 2e-93 CYP71B28 "cytochrome P450, family 71, subfamily B, polypeptide 28", cytochrome P450, family 71, subfamily B, polypeptide 28 (.1) AT3G26310 291 / 5e-93 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25140 288 / 3e-92 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25120 288 / 4e-92 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004907 [exp] 773 / 0 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10016601 [exp] 587 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 407 / 5e-138 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10029035 [exp] 397 / 3e-134 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 395 / 2e-133 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034230 [exp] 395 / 4e-133 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016599 [exp] 385 / 1e-129 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10040120 [exp] 384 / 8e-129 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 378 / 8e-127 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 427 / 3e-146 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 424 / 4e-145 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 424 / 5e-145 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 422 / 2e-144 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 405 / 2e-137 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 398 / 8e-135 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 394 / 2e-133 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 371 / 4e-124 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 360 / 4e-120 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 357 / 1e-119 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010545 pacid=23156691 polypeptide=Lus10010545 locus=Lus10010545.g ID=Lus10010545.BGIv1.0 annot-version=v1.0 ATGCAATACACCACCAATGGCGATGATCATGGAGTACTACTCGCAATTGTTCGCTTCTTACCCACAGCTGATCTTCCCCACCTTTCTCTTCTTATCCTTC CTCCTCCTCTTCATACTCCGCCTCAAGAATCCAAGCTCCACCACTGCAACAGCTCCGCCGCCGCCTGGTCCATCAACACTCCCCATAATCGGAAACCTCC ACCAGCTCGCCGGCTCCCCTCCCCACCACCGCCCGCCGCCGCCATCTTCAGCTACAATTACAACGACATCGTATTCGCACCTTACGGAGCTTACTGGAGG CAGCTCCGCAAGATCTGCGTCCTCGAGATACTGAGCGTCAAGCGCGTCCAATCGTTCCGGTCCGTGAGGGAGGAAGCCACCTCGAATGCGGTGGCCCGAA TCTCTGCTTCCGGCGCCGGCCGGGTGTTCAATTTCAGCAGGATGATCGTCTCCATGACTCTCGGGATCTCTGCCACGGTTACTTTCGGGAAAGATTATAA AGGACAGGACGAGTTTATCCCTGTGGTGGAGGAGATTACCAAGTTGCTGGGTGGGTTCTCCCTGGCGGATCTGTTTCCTAATTCTCTGAGATTGCTGGAG GTTTTCAGCGGGCTGAGGTGGAAGCTCCTCAAGCTGAGAGGCGAAATTGACAGGATGTTGGAGAGTATAATTAAGGATCACCGGAGTAGGGGAATTATTA AGAACGGAGATGGAGTTGATGATTTGGTTGATGTTCTGTTAAGGCTTCAGAATAGTGGCGATCTTGACTTTCCTATCACTGATATCAACATCAAAGCCGT CATTCTGGATATTTTTGTTGCCGGAAGTGAGACATCGTCGACAGTTGTGAACTGGACGATGTGCGAAATGCTTAAGAACCCAAGAGTTCTCCAGAAAGCA CAAGAAGAGATAAGGAGAGTGTTCGATGCGGAAAGAGACGTCGATGAAACTTTGCTTCACGAGCTGCACTATTTGAAACTAGTGATTAAAGAGTCGATGA GGCTACATACTCCTGCTCCACTCTTGCTTCCCAGGGAATGCACTGAAGACTGCGAGGTTAATGGGTTTCAGGTCAAGGCAAAGACCAAGGTGATCGTTAA CGCCTGGGCCATATCCAGGGATCCAAAGTATTGGGAGAACCCCGACGAGTTTTTTCCAGAAAGGTTTATAGACAATTCGATTGATTTCAAAGGCTTAAAC TTTGAGTTCTTACCGTTCGGTGCTGGGAGAAGAATGTGTGCCGGAATGGCCTTCGGTTTGGCTAATGTTGAGCTACCGTTGGCCAAGTTTCTGTACCATT TTGACTGGAAGCTCCCCGATGGTGAAACTTTGGACATGGCCGAAACGAATGGAGCTACCGTTGCTTTGAAAAATGACCTGATGCTGATTCCCACTCCTTA CCAGGCGCCAGAGTAA
AA sequence Show only first row Show all	>Lus10010545 pacid=23156691 polypeptide=Lus10010545 locus=Lus10010545.g ID=Lus10010545.BGIv1.0 annot-version=v1.0 MQYTTNGDDHGVLLAIVRFLPTADLPHLSLLILPPPLHTPPQESKLHHCNSSAAAWSINTPHNRKPPPARRLPSPPPPAAAIFSYNYNDIVFAPYGAYWR QLRKICVLEILSVKRVQSFRSVREEATSNAVARISASGAGRVFNFSRMIVSMTLGISATVTFGKDYKGQDEFIPVVEEITKLLGGFSLADLFPNSLRLLE VFSGLRWKLLKLRGEIDRMLESIIKDHRSRGIIKNGDGVDDLVDVLLRLQNSGDLDFPITDINIKAVILDIFVAGSETSSTVVNWTMCEMLKNPRVLQKA QEEIRRVFDAERDVDETLLHELHYLKLVIKESMRLHTPAPLLLPRECTEDCEVNGFQVKAKTKVIVNAWAISRDPKYWENPDEFFPERFIDNSIDFKGLN FEFLPFGAGRRMCAGMAFGLANVELPLAKFLYHFDWKLPDGETLDMAETNGATVALKNDLMLIPTPYQAPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	1.0	0.9951
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	1.4	0.9908
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	1.7	0.9854
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	3.2	0.9829
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	3.6	0.9778
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	4.0	0.9851
					Lus10041161 [exp]	4.7	0.9740
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	8.7	0.9726
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	8.8	0.9819
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	9.2	0.9668

Compare expression of checked genes

Lus10010545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.