Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63740 40 / 0.0005 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004905 [exp] 83 / 9e-19 AT1G27170 90 / 6e-20 transmembrane receptors;ATP binding (.1.2) Lus10004906 [exp] 57 / 9e-10 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10000945 [exp] 45 / 1e-05 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004911 [exp] 45 / 1e-05 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10010574 [exp] 42 / 0.0001 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 40 / 0.0006 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 40 / 0.0006 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 40 / 0.0008 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 40 / 0.0008 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010546 pacid=23156690 polypeptide=Lus10010546 locus=Lus10010546.g ID=Lus10010546.BGIv1.0 annot-version=v1.0 ATGGAATCGACATGTTCTCAAACGACGACGAGTGGCGGTTATGCTCCGTTTTCTGAGTGCATGCATGCGGTGACGAAAGTTCTAGAGTTTCTGGTGGCTT TATCCGGTGGCTATGTTTTAGTGAAGTTGGCAGGTTCTGGACTTCACTGGTGGCTTTATGACTTTGGACCTCACTATTTTGGCAAGTTGGCAAGTTCCAG AGTCCCTCCGCAACAGCTGCCGCCTGCATTCACCTTCAGGACCCCAGTTCCTTTCGCTACCTCCGGTCGATTAGCAGCGCTGAGGCAGTTCCCTGATCTG TCGAATCTAACCAAGTTAGAAAGTCTTAGTATCACTGGTTGTTGGCGTTTGACAGAAATCCAAGATCTGGCAGGATTAAAGGAGTCGTTAACATTTTTGG AAATACGCTCGTCTGATACTTTAGCAAAGGTTGAAGGCCTTGAATCTCTCGAATCACTTGAGGTTTTATCATTGGTAAGGGTTGGGGAGTTACGATTGCT ACCACCGTCACTGTCCCAGTTTGGCAAACTGCAGAAGTGA
AA sequence Show only first row Show all	>Lus10010546 pacid=23156690 polypeptide=Lus10010546 locus=Lus10010546.g ID=Lus10010546.BGIv1.0 annot-version=v1.0 MESTCSQTTTSGGYAPFSECMHAVTKVLEFLVALSGGYVLVKLAGSGLHWWLYDFGPHYFGKLASSRVPPQQLPPAFTFRTPVPFATSGRLAALRQFPDL SNLTKLESLSITGCWRLTEIQDLAGLKESLTFLEIRSSDTLAKVEGLESLESLEVLSLVRVGELRLLPPSLSQFGKLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	0	1
					Lus10017936 [exp]	1.0	0.8811
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	1.4	0.8801
AT4G02160			unknown protein		Lus10010018 [exp]	3.0	0.8524
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	4.0	0.8134
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	4.5	0.7167
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	5.1	0.7578
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030475 [exp]	5.2	0.6930
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	5.3	0.8241
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	5.5	0.7878
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	6.0	0.8197

Compare expression of checked genes

Lus10010546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.