Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04910 619 / 0 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 594 / 0 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 577 / 0 WNK9 Protein kinase superfamily protein (.1.2) AT3G48260 481 / 3e-164 WNK3 with no lysine (K) kinase 3 (.1) AT5G58350 459 / 4e-155 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G18750 455 / 2e-153 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G51630 451 / 3e-152 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT1G49160 450 / 1e-151 WNK7 Protein kinase superfamily protein (.1.2) AT1G64630 409 / 6e-136 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT5G41990 409 / 1e-135 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004904 [exp] 1204 / 0 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10001789 [exp] 654 / 0 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 652 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10041947 [exp] 483 / 4e-164 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 483 / 2e-158 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10042223 [exp] 462 / 1e-156 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 459 / 4e-155 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 454 / 1e-152 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10024192 [exp] 449 / 5e-152 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152300 [exp] 736 / 0 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 723 / 0 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 679 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 666 / 0 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.016G134600 [exp] 491 / 5e-167 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.012G086700 [exp] 483 / 4e-164 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 481 / 2e-163 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G155100 [exp] 479 / 3e-162 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 468 / 6e-158 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G057300 [exp] 441 / 1e-146 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10010547 pacid=23156673 polypeptide=Lus10010547 locus=Lus10010547.g ID=Lus10010547.BGIv1.0 annot-version=v1.0 ATGGATTCAGACAACCCAGAAATGAGTCATCTTCAAAGGCATGAACTTGAATCCCCAGATCGTGTTCCTGAATTTGTGGAGGTTGATCCCAGTGGCAGAT ACCGCAGATACAATGAAATTCTGGGGAAAGGAGCTTCCAAGACAGTATACAAGGCGTTTGATGAATATGAAGGAATTGAAGTGGCGTGGAATCAGGTGAA ACTGACGGATTTCATGCAGAGCCCAGGGGATCTGGAGAGGCTCTACGGCGAAATTCACCTCCTCAAGACTTTGAAACACGACAACATCATGAAATTCTAC TCTTCTTGGGTTGATATTCCTAGCAGAAACATTAATTTCGTTACTGAGATGTTCACCTCCGGCACTCTCAGACAGTATAGGCTAAAACACAAGAGGGTGA ATATTAGAGCAGTGAAGCATTGGTGTAGGCAAATCCTGAAAGGCCTACTTTATCTCCACAGCCGTGACCCTCCCATTATCCACAGAGACCTTAAATGTGA TAATATTTTTATCAATGGCAATCAAGGCCAGGTTAAGATTGGTGATCTTGGTCTTGCTGCAATCCTCAGGAAATCACATGCCGCCCGTTGTGTTGGAACT CCCGAGTTCATGGCTCCAGAGGTTTATGAAGAGGAATACAATGAGTTAGTGGACATATATTCATTTGGGATGTGTGTGTTGGAGATGGTTACGTTTGAAT ATCCATACAGTGAATGCACCCACGCTGCTCAGATTTACAAGAGAGTTATGGCGGGAAAAAAGCCAGAAGCTTTATACCAAGTGAATGACCCAGAGATAAG GCAGTTTGTTGAAAAATGTCTGGCCACCGTGTCCAATAGACTCTCTGCTAGAGAGCTTTTGATGGATCCTTTTCTTCAGATTGATGATTATGGATACGAC TTGAGGTCGTCTGACAACCATGGAAGCTTTATCAATGGCGACAGTCAATACCTTGGCTATGTTCCAGAATACCCTCCAGTTGATTGTGATGGTGAGATTG ATCTCTATGCTTGTGAAGATGATAAGCATTTCACAGATGTTGAGATTGCAATTCAAGGTAGGAAGCGAGATGACGATGATGGCATCTTCTTAAGGCTTAA AGTTTCAGGTACCCAAGGCCAAATCCGGAACATCTACTTCCCATTTGATGTTGAGAATGATACGGCCATGAGTGTTGTGACAGAAATGGTATCTGAACTT GCGATTTCTGATGAAGATGCAATCAAGATAGCTGACATGATTGATGATGAGGTTGCCTCCTTAGTTCCGGAATGGAAGAAGGAACCGATACCAAATGGTT TTTCGAATTCCAAGAACGTGCAGCAGCCTCCTCCTCCTTCTCCTCCTCTTGCTGCTCCTCATCCTCCTCACCATCGCAGGAGTGCGTCATTTCATGGCCG ATTTGAGGAGATAACATACCAAGTAGAAGGAGCAGAGACAGACAGAACATGTGATGCTCAATTACATGAAGAGCGGTCCATAGAGATGGACAGCCCTGAA GAAGAAGATGCCTGTAGCGCAAGAAACTCTGTCTCTGCCAACCCTTCAATGTCGACTGCATACTGGGAGGATTATGAGAATGAGATTAGGCAAGAGCTGA GGTGGCTCAAGGCCAAGTTTGAGATGCAGTTAAGGGAAGTTAGAGACCAACAGCTCGGACACCAACAACCCAGACCCCGAACCCCTTCAGGAGACTCTAG TAACGTGGAAGGCAAGAAAGATGCAAGTGTTGTAAAACTACCAAGGCTGACAAGAGATAACAACAACCAACTGCGAATCCATAAGGAGAGCGGAGTGCCA TCACCAAATCGAGCAGGTTCTGCTAAAAGCCGCAAGGAATTGAGCAAGTCTGGCAGTTTCAAGAGTTTTGAGAGAATAGGGAGCGTTGCTGCAGGTACTG CAACTCTGTGCAAAGCAACTTTGGTACCAAAATCACTTCATAGAGCTGCTTCCCTCCCGGTTGATGCTGTAGATGTTTAA
AA sequence Show only first row Show all	>Lus10010547 pacid=23156673 polypeptide=Lus10010547 locus=Lus10010547.g ID=Lus10010547.BGIv1.0 annot-version=v1.0 MDSDNPEMSHLQRHELESPDRVPEFVEVDPSGRYRRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLTDFMQSPGDLERLYGEIHLLKTLKHDNIMKFY SSWVDIPSRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSRDPPIIHRDLKCDNIFINGNQGQVKIGDLGLAAILRKSHAARCVGT PEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECTHAAQIYKRVMAGKKPEALYQVNDPEIRQFVEKCLATVSNRLSARELLMDPFLQIDDYGYD LRSSDNHGSFINGDSQYLGYVPEYPPVDCDGEIDLYACEDDKHFTDVEIAIQGRKRDDDDGIFLRLKVSGTQGQIRNIYFPFDVENDTAMSVVTEMVSEL AISDEDAIKIADMIDDEVASLVPEWKKEPIPNGFSNSKNVQQPPPPSPPLAAPHPPHHRRSASFHGRFEEITYQVEGAETDRTCDAQLHEERSIEMDSPE EEDACSARNSVSANPSMSTAYWEDYENEIRQELRWLKAKFEMQLREVRDQQLGHQQPRPRTPSGDSSNVEGKKDASVVKLPRLTRDNNNQLRIHKESGVP SPNRAGSAKSRKELSKSGSFKSFERIGSVAAGTATLCKATLVPKSLHRAASLPVDAVDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	0	1
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	1.0	0.8589
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	1.4	0.8398
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	2.8	0.8281
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	8.7	0.7541
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	8.9	0.8235
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	9.6	0.8296
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	10.2	0.8126
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	10.6	0.8157
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	11.5	0.8207
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	15.5	0.7654

Compare expression of checked genes

Lus10010547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.