Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004903 [exp] 87 / 2e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010548 pacid=23156644 polypeptide=Lus10010548 locus=Lus10010548.g ID=Lus10010548.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGGTTTTTCCTGGATTCACATTTAGCGTTTGCTCTAGCCTTGGCCATCTTCTTCAGCAATCCTAACTTGTCCTCTTCTTCTTCCGCACCAC CGCCGCTTTCAGACAGTGATTATCATGGGCCAACTCAACTTGATTGGAAAGTTGAATTGTTTTGTTATGCATCAGTGCCAGTGGTGTTGGTTGCCATTGT CATGATTCACGGGAAGCAGCACTATTGTCATGATTCAGAGACCGTTAACACGCTGTTGAGACACCAACAGAGTATCATCTATGGCTCCACAACTATGAAA CGTGGAAAAAGTACACCACTGGAAATATTAATGCAGAAAGTCTTGCTTGAGAATCTTAAATACGTGCCTGAACGTACTCCCAAACAGGCTAATTTGGTAA CTGAACTTTTGTTGGGTGGATGTGGCCAAGTCTTTCCATGGGTTTCACCAACTTAA
AA sequence Show only first row Show all	>Lus10010548 pacid=23156644 polypeptide=Lus10010548 locus=Lus10010548.g ID=Lus10010548.BGIv1.0 annot-version=v1.0 MASGFFLDSHLAFALALAIFFSNPNLSSSSSAPPPLSDSDYHGPTQLDWKVELFCYASVPVVLVAIVMIHGKQHYCHDSETVNTLLRHQQSIIYGSTTMK RGKSTPLEILMQKVLLENLKYVPERTPKQANLVTELLLGGCGQVFPWVSPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010548 [exp]	0	1
AT4G02420			Concanavalin A-like lectin pro...		Lus10016226 [exp]	14.3	0.7398
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	16.9	0.7614
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	17.1	0.7056
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025413 [exp]	18.4	0.7903
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	23.8	0.7917
AT4G17540			unknown protein		Lus10040155 [exp]	29.1	0.7842
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	29.2	0.7834
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	30.0	0.7911
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	34.6	0.7868
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	35.0	0.7864

Compare expression of checked genes

Lus10010548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.