Plant FIBer expression Database

Lus10010549 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22530 160 / 7e-50 unknown protein
AT4G14830 152 / 3e-47 HSP1 heat shock protein 20-like protein 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004901
[exp]
242 / 2e-81 AT3G22530 167 / 9e-52 unknown protein
Lus10000009
[exp]
0 / 1 AT3G22530 59 / 6e-14 unknown protein
Lus10035239
[exp]
0 / 1 AT3G22530 59 / 6e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G086400
[exp]
211 / 1e-69 AT3G22530 165 / 3e-51 unknown protein
Potri.008G154100
[exp]
205 / 4e-68 AT3G22530 140 / 2e-42 unknown protein
Potri.002G051100
[exp]
132 / 3e-39 AT3G22530 127 / 3e-37 unknown protein
PFAM info
Representative CDS sequence
>Lus10010549 pacid=23156659 polypeptide=Lus10010549 locus=Lus10010549.g ID=Lus10010549.BGIv1.0 annot-version=v1.0
ATGAAGGTTCATCCAATGCCCAAAAGGAGGAACAACGTCACAATCCGGTACTATGTAGACCACGGTGACGTCAACAATCCGAGAGGAGACGGTGGCGGGA
TCTTGTCCTCCTCCGGCGGCGGCGGAAACAAGAAGCTGAGAAGGCTGCCCCACATCTTCAATCGAGTGCTGGAACTACCGTTCCGGTCGGATGCTGACGT
GTCGGTGGAGGAAAGCACCGATTGCTTCCGGTTCGTGGCGGAGGCGGACGATGTAGGGGAAGTTAGAGCTCACACCATCGAAATCCATCCCGGGGTTACC
AAAATCGTGATTCGACCCAACGGGTACTTCGAATTGCCGTCGTTGGATGATTTGGAGTTGGATATGTGGAGGTTCAGGCTTCCGGATTCGACCCGACCCG
AGCTGGCCAGCGCTGTTTTCATGGACGGGGAGCTGATCGTGACGGTGCCCAAGGGAGATGAAGTGGAGGTTGAAGAAGGGAACGGTAATAATAATAATCG
CAGGGAGTATAGAGGAGCTGGAGGTATGGGAAACAATAATAACAATGCTAGGCTTGTCCTTGTACAGTAA
AA sequence
>Lus10010549 pacid=23156659 polypeptide=Lus10010549 locus=Lus10010549.g ID=Lus10010549.BGIv1.0 annot-version=v1.0
MKVHPMPKRRNNVTIRYYVDHGDVNNPRGDGGGILSSSGGGGNKKLRRLPHIFNRVLELPFRSDADVSVEESTDCFRFVAEADDVGEVRAHTIEIHPGVT
KIVIRPNGYFELPSLDDLELDMWRFRLPDSTRPELASAVFMDGELIVTVPKGDEVEVEEGNGNNNNRREYRGAGGMGNNNNNARLVLVQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22530 unknown protein Lus10010549
[exp]
0 1
AT1G70590 F-box family protein (.1) Lus10026694
[exp]
1.4 0.8737
AT1G76920 F-box family protein (.1) Lus10028591
[exp]
3.0 0.8608
AT5G59550 zinc finger (C3HC4-type RING f... Lus10004712
[exp]
6.6 0.8582
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Lus10024108
[exp]
10.4 0.8273
AT4G40042 Microsomal signal peptidase 12... Lus10015793
[exp]
10.6 0.8649
AT2G42310 unknown protein Lus10042351
[exp]
11.6 0.8246
AT5G22060 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMO... Lus10004109
[exp]
12.8 0.8520
AT5G42060 DEK, chromatin associated prot... Lus10032409
[exp]
13.7 0.8430
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Lus10014747
[exp]
14.7 0.8398
Lus10031351
[exp]
16.9 0.8212

Lus10010549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.