Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05410 337 / 4e-111 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G22520 94 / 2e-20 unknown protein AT4G14840 84 / 6e-17 unknown protein AT3G07780 59 / 5e-09 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G48160 53 / 3e-07 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G57380 43 / 0.0006 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004900 [exp] 482 / 1e-169 AT1G05410 207 / 6e-63 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10021915 [exp] 440 / 3e-151 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 351 / 7e-117 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041202 [exp] 85 / 2e-17 AT3G22520 327 / 1e-104 unknown protein Lus10010551 [exp] 84 / 8e-17 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006124 [exp] 83 / 2e-16 AT3G22520 340 / 4e-106 unknown protein Lus10006372 [exp] 59 / 6e-09 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10012327 [exp] 59 / 7e-09 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 47 / 4e-05 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086600 [exp] 399 / 6e-135 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G086700 [exp] 90 / 5e-19 AT3G22520 320 / 5e-102 unknown protein Potri.008G153800 [exp] 86 / 1e-17 AT4G14840 329 / 7e-106 unknown protein Potri.002G221500 [exp] 59 / 3e-09 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 59 / 6e-09 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 52 / 1e-06 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 50 / 5e-06 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10010550 pacid=23156705 polypeptide=Lus10010550 locus=Lus10010550.g ID=Lus10010550.BGIv1.0 annot-version=v1.0 ATGGAAATTGACGATGAGAGCACTGTAGATACCCCTGAAGCAAAGGAAATCTACTCCCGTCTGATGCCAGTTGGATATGATGTGGGTGGTGAAGGCCTGC CTTATGCTCCTGAAAATTGGCCTAATCTTGGTGACATGTGGGGTTGGAAAGTCCAGAAGCAACTTACAGCTGCTGGGTATCGTGTGGAAAGACATCTCTA CCTCCCGGAAAGCCTTCACCATCTTGTGGATGATCCTGCCCACCTCGAGAATGGGTTTACCAGCAAGCGTTCTGTTCAGAGATTCCTGCATACGCATTTC CCTCATGTAGATGATGATGTCATTTTTGGTTCCTTTTCCTGGACGATCCCTTGTACTCAGGCTGCAATTACTGGACGTGGAGATGGGTCTCTTACTATCA TCGGAAAGAACATTGATAATCATGGAAGCAGCTCCTATACTGTGCCTCCTTTAGATTATCCCTCTCATCTCTTGTCCAACACCGGCTTATGTAAGGCTGG GAATACGGTTTGCAGCGGTCTTGAAGAGTCTATAGACAATACACCTTTAGCTGCATTAGATTGTAAAGTTTGCTGTACTGAGCCTCAGTTCTGCCGTGAT TGTTGTTGTATTCTCTGTTCAAAAACAGTAGATCCATCACATGGAGGTTACAGTTACATCAAGTGTCAATCAGTGGTGACTGGATGCTTCATATGTAGTC ATGTAGCCCACCTTGAGTGTGTTCTGCGAGTTTACATGGCAGGAACTGTTGGAGGAAGCATTGGTCTTGATGCTGAGTACTCCTGCCGTCGCTGTGATGT AAAAACTGATCTAGTCCCACATGCTGTGAAGGCTTTCCAAGCATGCAGATTCATTGATTCTCGGGATGAAATAGAGAAAATACTAAATCTTTGTATCTGC ATTTTACGCGGCACGGAAAGAGATAATGTCAGGGATTTGCTGAAACGCATCGAATCAGCTGGCAGGAAGCTTAAGCTTGGAACTACCCTCGAAGACATAT GGAAAGCAGATAAGGATGCAGCAGCTGACAACTTATTGGACGAAAAGCTAAGCCTACCAACTTTTGGATCCATGCTACGTGATTACAATGACGAAATTCT GAAATTTGATGTCGAGATCAATGATGTGCTCCGTTCACTAAGAAAGTCTCAGGAACTCGAGTATGAGATTGCAGAGGAACAACTTCTTGGCCAGAAGAAA AACCTGCAAAAGCTCTATCATCAGTTTCAGAAAGAATATTCAGCCTTAGGATACCTCAAATCAGAGAGAGCTAGAGATGGACTACGGAATACGCTGGCTA GCAGGGTTGACATGATTGATTGGGAGAGGAGGAAACTGGCGCATATGAAAGAAGTGGCCAAGGGTTTTGGGAAGACCTCCGAAAAGACTTGCACGGAACT TTTCGGGTTGGAAGTTGAGAAACCAAGCAATGGAGAGCTCCTCTAG
AA sequence Show only first row Show all	>Lus10010550 pacid=23156705 polypeptide=Lus10010550 locus=Lus10010550.g ID=Lus10010550.BGIv1.0 annot-version=v1.0 MEIDDESTVDTPEAKEIYSRLMPVGYDVGGEGLPYAPENWPNLGDMWGWKVQKQLTAAGYRVERHLYLPESLHHLVDDPAHLENGFTSKRSVQRFLHTHF PHVDDDVIFGSFSWTIPCTQAAITGRGDGSLTIIGKNIDNHGSSSYTVPPLDYPSHLLSNTGLCKAGNTVCSGLEESIDNTPLAALDCKVCCTEPQFCRD CCCILCSKTVDPSHGGYSYIKCQSVVTGCFICSHVAHLECVLRVYMAGTVGGSIGLDAEYSCRRCDVKTDLVPHAVKAFQACRFIDSRDEIEKILNLCIC ILRGTERDNVRDLLKRIESAGRKLKLGTTLEDIWKADKDAAADNLLDEKLSLPTFGSMLRDYNDEILKFDVEINDVLRSLRKSQELEYEIAEEQLLGQKK NLQKLYHQFQKEYSALGYLKSERARDGLRNTLASRVDMIDWERRKLAHMKEVAKGFGKTSEKTCTELFGLEVEKPSNGELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	0	1
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	3.3	0.9179
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	3.7	0.9122
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	9.6	0.8865
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	10.1	0.9042
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	10.6	0.9027
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	11.0	0.9106
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	15.5	0.9067
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	18.0	0.8904
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	19.7	0.9010
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	20.9	0.8852

Compare expression of checked genes

Lus10010550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.